Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0405 ATGGCGGAGCAACTGGACCTCAACAACCTGAAAGCACTGAAAGTGTTAGGGAAAGGAGCCATGGGCACGGTGTTCCTCGTCCAACACAACTCCTCCCACGTGGCACTCAAAGTCGTAGACAAATCATCCTCCCTCCACGACGCCCCTCGCCGAGCCCGCTGGGAAATCAACGTCCTGTCACGTTTATCCCACCCCTTCCTCCCTTCCCTATTGGGCTCATTCGAGTCCGAAGCCTTAATGGGCTGGGCCGTCCCTTACTGCCCCGGCGGCGACCTCAACGTCCTCCGTTACCGCCAAACCGACCACGTGTTCTCCCCCGCCGTGATCCGCTTCTACGTGGCCGAGATCCTCTGCGCGCTGGACCACCTCCATAGCATGGGCATCGCCTACCGCGACCTCAAACCCGAAAACGTCCTCATCCAGCAATCCGGCCACGTCACCCTCACCGACTTCGACCTCTCCCGAACCCTCGCTCCCAAAACCATCAAAACCGTTGTCTCCCTCGACGACTCCGACACTCCCCGAAAACATCGCCGCAACTTCCGGTGGGTCCCGCTCCACGCCAACAGAACCCCCAAGTCCGCCCGAGTCAGCCCCGTGAGTCGACGCAGGCCGAGTTTCTCCACCGGCGAGCGCTCCAACTCGTTCGTCGGCACCGAGGAGTACGTCGCGCCGGAGGTCGTGCGCGGCGACGGCCACGAGTTCGCCGTGGATTGGTGGGCCCTGGGAGTGCTCACCTACGAGATGCTCTACGGCACGACGCCGTTCAAGGGGAAGAACCGCAAGGAAACGTTTCGAAACGTGTTGCTGAAGGCGCCACAGTTCGTGGGGATGAAAACGGCGTTGACGGACCTCATCTCGCGCTTGCTTGAAAAGGACCCTATGAAGCGTTTGGGTTACGTTCGAGGCGCTAGCGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTCAAGTGGGACCTACTAACGGAGGTTACGCGCCCGCCGTTTATTCCGACAAGAGACGACGTCAAGCCGTTCGCCGCTGGACTCGACATAAGGGATTACTTCCAGAGGTTGAAATCCCCGCCGTCTTTGCCTCCTTCGCCGTTACCGTCACCGTCCTTTGAGTTTCAGAAGAATGTTTCTTTACCAGAATTCTAA 1140 0.593 MAEQLDLNNLKALKVLGKGAMGTVFLVQHNSSHVALKVVDKSSSLHDAPRRARWEINVLSRLSHPFLPSLLGSFESEALMGWAVPYCPGGDLNVLRYRQTDHVFSPAVIRFYVAEILCALDHLHSMGIAYRDLKPENVLIQQSGHVTLTDFDLSRTLAPKTIKTVVSLDDSDTPRKHRRNFRWVPLHANRTPKSARVSPVSRRRPSFSTGERSNSFVGTEEYVAPEVVRGDGHEFAVDWWALGVLTYEMLYGTTPFKGKNRKETFRNVLLKAPQFVGMKTALTDLISRLLEKDPMKRLGYVRGASEIKEHEFFRGVKWDLLTEVTRPPFIPTRDDVKPFAAGLDIRDYFQRLKSPPSLPPSPLPSPSFEFQKNVSLPEF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0405 379 Pfam Protein kinase domain 12 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0405 379 Pfam Protein kinase domain 209 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0405 379 SMART serkin_6 10 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0405 379 ProSitePatterns Protein kinases ATP-binding region signature. 16 37 IPR017441 GO:0005524
Ssu8g0405 379 Gene3D Transferase(Phosphotransferase) domain 1 211 332 - -
Ssu8g0405 379 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 5 357 - -
Ssu8g0405 379 ProSiteProfiles Protein kinase domain profile. 10 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0405 379 PANTHER FLIPPASE KINASE 1-RELATED 5 357 - -
Ssu8g0405 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Ssu8g0405 379 SUPERFAMILY Protein kinase-like (PK-like) 7 369 IPR011009 -
Ssu8g0405 379 MobiDBLite consensus disorder prediction 356 379 - -
Ssu8g0405 379 Gene3D Phosphorylase Kinase; domain 1 10 90 - -
Ssu8g0405 379 Gene3D Transferase(Phosphotransferase) domain 1 91 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0405 Ssu-Chr8 6512414 6513553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0405 3 379 AGC Kinase Gene Family AT3G20830 61.809 7.73e-160 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu8g0405 Pkinase 7.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0405 - K08286 gmx:100802613 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0405 8 6512414 6513553 Ssu8g0405 8 6512414 6513553 ECH
Ssu8g0405 8 6512414 6513553 Ssu3g2703 3 80915821 80917068 PCT