Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0402 ATGGATTCTTCTGCTGTCGTGGATAGCACAATTCCAGAGCCTCATAATGATATGGAATTTGAATCTCATGAAGCTGCATATGCATTTTACAAAGAATATGCCAAGTCTGCAGGTTTCGGCACTGCTAAGTTGAGCAGTCGGCGGTCTAGGGCATCAAAAGAATTTATTGATGCCAAATTTTCTTGTATAAGATATGGTAACAAGCAGCAATCTGATGATGCAATTAATCCTCGCCCTTCTCCCAAAATTGGTTGTAAAGCAAGCATGCATGTGAAGAGAAGGCAAGATGGTAAATGGTATGTCTTTAGCTTTGTGAAGGAGCATAATCATGAGCTGTTACCTGCTCAAGCTCATTTTTTTCGGAGTCATAGGAGTTCTGATCCACTAAGTAATGATGTTCGTATGCGAAGGCGGAAGAACTCAAATGcagtttctaaattatttactgCATATCAGAATGTTGATTGCTTAGAGAACTTTGTGAAACATCAGCATGATAAAGGACGAAGTTTGGTTCTAGAAGCAGGGCATGTCCAATTGCTTCTTGAACTCTTCATGCACATGCAGGAAGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAGCATCGGCTGAGAAATGTGTTCTGGGTTGATACTAAAGGCTTGGAAGATTTTGCTTACTTTTCTGATGTTGTTTCTTTTGACACAACATATTTTACAAGCAAATATAAAATACCATTGGTACTTTTCATTGGAGTAAACCATCATATTCAACCGACATTGCTTGGTTGTGCATTGATAGCTGATGAGACAATATATACTTTTGCCTGGTTACTGCAAACATGGTTTATAGCAATGGGGGAACGAGCTCCACAGGTGATTCTCACCGACCAAAATGAGGCTATTAAAGCAGTTGTTGCACATTTTCTTCCAGGAACACgtcattgtttttgtttctgGCATATTTTGGAAAAGATACCAAAACAGCTAGAATTTTTAGGCACATGGCACGAGAACTTTATGGAAGAATTTAACAAGTGCATATATAAATCATGGACAGAAGAGCAATTTGAAAAGAGATGGTGGAAGTTGATTGACAATTTTAACCTTAGAGATGTTGACTGGGTTCGATCCTTATATGATGACCGTGCATATTGGGTGCCAACTTTTATGAAAGATATTTCTTTTGCTGGCTTGTCTCCTAGTTCACGCTCAGAAAGTTTAAATGCGTTGTTTGACAACTATGTCCAAGTTGATACTTCATTGAGAGAATTTATAGAACAGTATAGAGTGATTCTTGAAGTTAGGCATGAAGAGGAAGCCAAAGCAAGTTTTGATGCTTGGCATGAAACACCAGAATTGAAGTCTCCTTCCCCTTTCGAAAAACAAATGTTGTCAATTTACACACATGAAATTTTTAGAAAGTTCCAGGTTGAGGTTTTGGGTGCAGCTGCTTGCCatcttaagaaagaaaatgatggtGTGACTACTACTTATACTGTGAAAGActttgaaaataatcaaaactataCAGTAGAGTGGAACACTTCAAGTTCAGATATATGTTGTTCATGTCACTTGTTTGAATATAAAGGTTATCTCTGTAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATTCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGCTATGAGCAAGCATCCTATTGGTGAAAAATTGGAAGAGGTTCATTCAAAGGTGCGGCGATTCAATGATTTATGTAGACGGGCCATAATATTAGGTGAAGAAGGTTCTTTGTCACAAGAAAGTTACTATATTGCTTTAGGTGCCATAAATGAAGCACTCAAGCAATGTGCTAATTTGAACAACCCTGTTGAGAATGGTATGAGACCTGATACCTCAGGTACCCATGTTATTTGTAATGTTGAGGAAGAATATCAATCTATCATTACATCTAACAGTAAGGTCCCTGATCCAAAAATGAATATGGGAAAGAAAGCTGCGAGGACTGGTGTGGCTGGTAGGAGTCTAGGAAGTGTTGAAAACAGTGAAGGAAATAAAGGAAAGGTATCTCAGGTCGAAGCAGTGAGTGGGAAAGATGGTTTTCAAGAAATGGACTCGACTGATCTGAGATCACACAGTGTCACGCCAATGCAGTTTCACAGTGTGGTACCCACTCTGTTCCAGAATGTTTCGTCACAATTTCATACTGCACCTTCAACTAATTTGCATGAGAATCCTCTTCCTCGttag 2241 0.3744 MDSSAVVDSTIPEPHNDMEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVFSFVKEHNHELLPAQAHFFRSHRSSDPLSNDVRMRRRKNSNAVSKLFTAYQNVDCLENFVKHQHDKGRSLVLEAGHVQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDTKGLEDFAYFSDVVSFDTTYFTSKYKIPLVLFIGVNHHIQPTLLGCALIADETIYTFAWLLQTWFIAMGERAPQVILTDQNEAIKAVVAHFLPGTRHCFCFWHILEKIPKQLEFLGTWHENFMEEFNKCIYKSWTEEQFEKRWWKLIDNFNLRDVDWVRSLYDDRAYWVPTFMKDISFAGLSPSSRSESLNALFDNYVQVDTSLREFIEQYRVILEVRHEEEAKASFDAWHETPELKSPSPFEKQMLSIYTHEIFRKFQVEVLGAAACHLKKENDGVTTTYTVKDFENNQNYTVEWNTSSSDICCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILQRWTNAAMSKHPIGEKLEEVHSKVRRFNDLCRRAIILGEEGSLSQESYYIALGAINEALKQCANLNNPVENGMRPDTSGTHVICNVEEEYQSIITSNSKVPDPKMNMGKKAARTGVAGRSLGSVENSEGNKGKVSQVEAVSGKDGFQEMDSTDLRSHSVTPMQFHSVVPTLFQNVSSQFHTAPSTNLHENPLPR 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0402 746 MobiDBLite consensus disorder prediction 672 686 - -
Ssu8g0402 746 SMART 26again6 517 544 IPR006564 GO:0008270
Ssu8g0402 746 Pfam MULE transposase domain 227 320 IPR018289 -
Ssu8g0402 746 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 707 IPR031052 GO:0006355
Ssu8g0402 746 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 707 - -
Ssu8g0402 746 MobiDBLite consensus disorder prediction 667 686 - -
Ssu8g0402 746 Pfam SWIM zinc finger 506 540 IPR007527 GO:0008270
Ssu8g0402 746 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Ssu8g0402 746 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0402 Ssu-Chr8 6463082 6466380 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu8g0402 MULE 2.1e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0402 - - gmx:100805273 1390.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0402 8 6463082 6466380 Ssu8g0402 8 6463082 6466380 ECH