Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0401 ATGGAGTCAGATCTCGAGCAACAGCCGCAGGTAAATTCTTCGGGTTTGACACGGTACCGATCGGCGCCGAGTTCTTATTTCTCGAGCATCATTGACCGCGAGTTCTACGAGCACATTTTCAACCGACCCTCTAGTCCCGAAACAGAGCGAGTGTTCTCACGCTTTATGAATAGTTTAAGCGGTGACGTTGCAGCGGAGGAAGATTCGCTCCATCAGAAACTCTCAACTGATTCCGCGGTTAAGGAAGAGGTTGGCCAGCGGGAGCAGGGCCTCAACGAGGAACACGTGGCGCTCCAGCAGAGTAATAACATCAATGATTATAACTCTGCTTCTCATAATTTCTACCAAAGCTCCTCCAAACCACCTTTGCCGAACCAGAACCAGAGCAACCTTCCCTCAGGTATGGAAGGAGCGTATTCAATGGGACTCAGGCAAAATAATTCTAACCTTATCAGGCATAGCAGTTCACCAGCAGGACTATTTTCCCAAATAAACATTGAAAATGTGTATGCTGGTGTGAGAGGCATGGGAACTTTAGGGGCTGTTAATGACAGCGTCGAAGAAGCGAAATTTTCTACTTCACGGAGGTTGAAGAATCAAGCGAACTATTCGGCGGGGCGAATGTCGTCCATAGCTGAAACTGGGGACAAAGGGAATAGAGAAAGTAGTCCAGACAATGAAGCTTTTGCTGACGGTAACGATTTTATGTCTGGTTTCCAAGTTGGTCGTTGGGATGATGCTGCGATGATGTCTGACAACGTTGGTGGTCTGAAAAGATTTAGAGAAAACGATGCAAAACCATTTTCTGGTATAAATGCTGCCGAGACTCAGAATGAAGCGGGACAGTCTCCTGCTCCTTTGGCCCATCACTTGAGTTTGCCGAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTTCTGCAGTTTTCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCAAGGAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTTGTCCCAAACATGGACAAGCAAACTAACACGGCAGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGTTGAGACGCTTTCAGACAGTCATGCTAAGTGTACGTGTTCACACGAGAAGCAACAATAA 1188 0.4663 MESDLEQQPQVNSSGLTRYRSAPSSYFSSIIDREFYEHIFNRPSSPETERVFSRFMNSLSGDVAAEEDSLHQKLSTDSAVKEEVGQREQGLNEEHVALQQSNNINDYNSASHNFYQSSSKPPLPNQNQSNLPSGMEGAYSMGLRQNNSNLIRHSSSPAGLFSQINIENVYAGVRGMGTLGAVNDSVEEAKFSTSRRLKNQANYSAGRMSSIAETGDKGNRESSPDNEAFADGNDFMSGFQVGRWDDAAMMSDNVGGLKRFRENDAKPFSGINAAETQNEAGQSPAPLAHHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLSDSHAKCTCSHEKQQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0401 395 Gene3D - 324 395 IPR036638 GO:0046983
Ssu8g0401 395 MobiDBLite consensus disorder prediction 1 21 - -
Ssu8g0401 395 MobiDBLite consensus disorder prediction 112 131 - -
Ssu8g0401 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 373 IPR011598 GO:0046983
Ssu8g0401 395 MobiDBLite consensus disorder prediction 200 232 - -
Ssu8g0401 395 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 392 - -
Ssu8g0401 395 Pfam Helix-loop-helix DNA-binding domain 328 374 IPR011598 GO:0046983
Ssu8g0401 395 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 392 - -
Ssu8g0401 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 387 IPR036638 GO:0046983
Ssu8g0401 395 SMART finulus 329 379 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0401 Ssu-Chr8 6407954 6410087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0401 7 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.399 7.84e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0401 HLH 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0401 - - gmx:100806368 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0401 8 6407954 6410087 Ssu8g0401 8 6407954 6410087 ECH
Ssu8g0401 8 6407954 6410087 Ssu3g2709 3 81052174 81056012 ECH
Ssu7g2771 7 57418448 57421741 Ssu8g0401 8 6407954 6410087 ECH
Ssu4g1442 4 23982627 23984774 Ssu8g0401 8 6407954 6410087 ECH