Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0397 ATGGAAGCTGGACAAGGGTGCCGTCAAGTTCTTGGAGACATTGGTAATTTGGAGGTGCCTAGAATCACCGAAGGGAAACTGGTTTCAAGACCAATTACAAGGAACATCCATGCAAAACTGTCGACAAATGAACAAGCTGAAGAAAATCTGGTAGAGGTGTTGGAAGTCAAAGCTAATGAGCAAGGAGCTGCACAAGGGAAGAAAAACCTTATTGTACCTACCCTAGACGATAAAGCAATTATTCAGGAGGAACATGGCGCAGAAGGTTTAACGCACAAGCCAAATCCTGAACCCCAAGATGTGGTTAGTTTTGAAGGTGGAGAAAGGGCGAATTTTGTTTGTGAAAGAAAGTCAAGGGAAAGATCTCCTAGGAATGTCAAGACTCTGACTTCAGAACTTACTGCACAAAGCAAGGAAGCTTGTGGAGTATTGATTCAAGCTGAGGATCAGCCTGTTGACATTGATGCAGATGATCCTAATGAACTGGCAGCAGCTGAATACCTTGACGATATATACAGATTCTTTAAGCTAACTGAACTGGAGACTGAGAATCGAGCTTCAGATTACATGGAATCACAGCATGATATCAATGAGATGATGAGATCTATTACGGTGAACTGGCTGGTTGACGTCCACATGAGATTTCAATTAATGCCCGAGACCCTCTTTCTTACGGTAAATATAATCGATCGATACCTCTCATCAACAATTGTGTCTAAAGAAGAATTACAGCTGTTAGGCATAAGCTCAATGATCATAGCTTGCAAATATGAAGAGACATGGCCTCCTCAGGTTAAAGACTTCATTAGCATATCACATAATGCTTACACCAGAAATCAGATCCTTTCCATGGAGAAAACAATTCTGAAGAGGTTGGAATGGCATTTAGCTGTCCCCACCCCCTATGTCTTCTTAGTTAGATTCACCAGAGCTTTTGGCCCACCAGATGAGCAGATGGAGAACATGGCATTTTTCTTAGCCGAACTCGGTCTTGTGCACTATCAAACCGCAATTTTGTTCCTCCCTTCAATGACTGCCGCGGCAGCAGTCTATGCTGCTCGCTGCACACTCAACAAGAAGCCCTTCTGGAACGATATCCTAAAGCACCGGGCAGGCTACACCACAGAACAACTaagAGATTGCGCGAAGCTTCTAGTTAGGTTACACTCAAGTGTTCATGACAGCAAACTGAAGTCAGTGTACCAAAAATTCTGTAGCGTAGACCGAGCGGGTGTTGCATTTTTATCTCCACCGGAAGATatagaaaaaacatttatagaGAATTAA 1287 0.4266 MEAGQGCRQVLGDIGNLEVPRITEGKLVSRPITRNIHAKLSTNEQAEENLVEVLEVKANEQGAAQGKKNLIVPTLDDKAIIQEEHGAEGLTHKPNPEPQDVVSFEGGERANFVCERKSRERSPRNVKTLTSELTAQSKEACGVLIQAEDQPVDIDADDPNELAAAEYLDDIYRFFKLTELETENRASDYMESQHDINEMMRSITVNWLVDVHMRFQLMPETLFLTVNIIDRYLSSTIVSKEELQLLGISSMIIACKYEETWPPQVKDFISISHNAYTRNQILSMEKTILKRLEWHLAVPTPYVFLVRFTRAFGPPDEQMENMAFFLAELGLVHYQTAILFLPSMTAAAAVYAARCTLNKKPFWNDILKHRAGYTTEQLRDCAKLLVRLHSSVHDSKLKSVYQKFCSVDRAGVAFLSPPEDIEKTFIEN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0397 428 Pfam Cyclin, N-terminal domain 170 296 IPR006671 -
Ssu8g0397 428 SUPERFAMILY Cyclin-like 160 296 IPR036915 -
Ssu8g0397 428 SMART Cyclin_C_2 299 418 IPR004367 -
Ssu8g0397 428 Gene3D - 184 297 - -
Ssu8g0397 428 CDD CYCLIN 200 289 IPR013763 -
Ssu8g0397 428 CDD CYCLIN 298 386 IPR013763 -
Ssu8g0397 428 Coils Coil 43 63 - -
Ssu8g0397 428 SMART cyclin_7 206 290 IPR013763 -
Ssu8g0397 428 SMART cyclin_7 303 387 IPR013763 -
Ssu8g0397 428 Gene3D - 170 412 - -
Ssu8g0397 428 PANTHER CYCLINS 8 419 IPR039361 -
Ssu8g0397 428 PANTHER CYCLIN-B1-4 8 419 - -
Ssu8g0397 428 Pfam Cyclin, C-terminal domain 299 417 IPR004367 -
Ssu8g0397 428 PIRSF Cyclin_A_B_D_E 1 426 IPR039361 -
Ssu8g0397 428 SUPERFAMILY Cyclin-like 298 420 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0397 Ssu-Chr8 6379550 6381559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0397 118 420 Core Cell Cycle Gene Families AT2G26760 51.316 6.36e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0397 K21777 - jre:109013760 441.81