Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0385 ATGGATTCGGAGGATGATATGCACGACGCCAACGATGTCGAGTCCCTCGATGACGATTTCTACAGTGGCGAGACCGAGGATGCTCCCATGGATTACTACAGTGACTACGATGACGACGCCAATGATTACTTAGAGGATGTCGACGATTCCGACCGGATTGAGTCTCGCCGCCCCGAGCAAAATTTCACCATATTGAAGGAATCAGATATCCGGCATAGGCAGGAAGACGACATCACTAGAGTAGCGACAGTTCTTTCCATACCGCAGGTTTCTGCGAGCATCCTACTTCGTCACTACAATtgGAGTGTTAGTAAAGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTCCGAAAAACAGTTGGTTTGTTGGAGAAGCCAGTTTTCCAGAATTCTAATCCTAGAGAGCTTACTTGTGGCATCTGTTTTGAAACGTATCCTCGTGCACGGGTTCAATCTGTTGCTTGTGGTCATCCTTACTGCTTTTCATGCTGGGCAGGGTATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGGGGCTGAGATGTCCTGATCCCACCTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAACATCTGATGAAGACAAAGAGAAGTATGACCGTTATCTTCTTAGGTCTTATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCTTCTGTTCATATAGCTTTTGCTGGAACTGCACAGAGGAGGCTCACCGTCCAGTGGACTGTGGCACCGTGGCAAAGTGGATTTTGAAAAACAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCACcttgtaaatttgaattttgctgGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTTTATGCTTGCAATCGTTATGAAACAGCTAAACAAGAGGGAGTGTATGATGAAActgaaagaagaagagaaatggCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGCGACACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTGAAATGGACATATGCATATGGGTACTATTTACCTGAGCATGAGCATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTCAATGCTGAAGGCCCATCTAGAGAATTCAATGACTTTCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTGAGGGCATTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAACCAGCTCAAAAAATGCGGCAGGGAGCAGCAAGGGGAGAGGCGGAAGAGGAAAAGCCACTATTCGAACTAGCATATCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAGCATTGTACCTATGCAAATATTAAGTCTGCCACCACATGCCAGATGTGCAATCAACAGCGACGGTGA 1773 0.4365 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDDANDYLEDVDDSDRIESRRPEQNFTILKESDIRHRQEDDITRVATVLSIPQVSASILLRHYNWSVSKVHDAWFADEDQVRKTVGLLEKPVFQNSNPRELTCGICFETYPRARVQSVACGHPYCFSCWAGYIGTSINDGPGCLGLRCPDPTCGAAVGQDMINLLTSDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCFCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNAEGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKATIRTSISSRMTDDNHWSCEHCTYANIKSATTCQMCNQQRR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0385 590 MobiDBLite consensus disorder prediction 1 40 - -
Ssu8g0385 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 219 IPR013083 -
Ssu8g0385 590 ProSiteProfiles Zinc finger RING-type profile. 139 185 IPR001841 -
Ssu8g0385 590 MobiDBLite consensus disorder prediction 522 558 - -
Ssu8g0385 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 538 IPR031127 GO:0004842|GO:0016567
Ssu8g0385 590 SMART zf_4 564 588 IPR001876 -
Ssu8g0385 590 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Ssu8g0385 590 Pfam Ariadne domain 357 518 IPR045840 -
Ssu8g0385 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Ssu8g0385 590 SUPERFAMILY RING/U-box 134 220 - -
Ssu8g0385 590 SUPERFAMILY RING/U-box 289 337 - -
Ssu8g0385 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Ssu8g0385 590 ProSiteProfiles Zinc finger RanBP2 type profile. 562 590 IPR001876 -
Ssu8g0385 590 SMART ibrneu5 274 344 IPR002867 -
Ssu8g0385 590 SMART ibrneu5 208 270 IPR002867 -
Ssu8g0385 590 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 538 - -
Ssu8g0385 590 Gene3D - 560 590 - -
Ssu8g0385 590 SUPERFAMILY RING/U-box 208 277 - -
Ssu8g0385 590 Gene3D - 266 521 - -
Ssu8g0385 590 MobiDBLite consensus disorder prediction 522 540 - -
Ssu8g0385 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Ssu8g0385 590 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Ssu8g0385 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0385 Ssu-Chr8 6115153 6122181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0385 17 589 ARIADNE family AT1G65430 70.224 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0385 K11968 - gmx:100810427 1146.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0385 8 6115153 6122181 Ssu3g2726 3 81460957 81469059 PCT