Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0372 ATGTCTTCTATTTCCATCTCTTATGGCGACAAAGGGTCTGTTTTCTGTGGCTTGAAATCAGATGGATCTCACACTGTGAACTGTTATGGAATGAACTCAGCCATAATTTATGGAACACCAACGCATTTCCCATTCCTTGGTCTAACCGCTGGTGATGGCTTTGTGTGTGGGCTTCTAATGAGTTCTAGTCAACCATATTGCTGGGGTAGCAGTGGCCACGTTGAAATGGGTGTGCCACAACCTATGGTTAAGGGAGCTCAGTACCTAGAGATCAGTGCTGGGGACTATCACGTTTGTGGATTGAGGAAACCGTTAACTGGAAGACACAGGAACACTTCTTTGGTTGATTGTTGGGGCTACAACATGACCAAGAACTATGTCTTTGATGGGCAGGTTCAATCAATCTCAGCAGGTTCTCAATTCAATTGTGGCTTGTTTTCCCAGAATAGGACTGTGTTCTGCTGGGGGGATGAGACTAGTAGCCAAGTTATTGATATGATCCCTCAAGGCATGAGGTTCCAGGAGATCTCTGCTGGAGGTTACCATGTGTGTGGAATCTTAGAAGGGGTGAATTCTAGAGCTGTTTGTTGGGGGAGGAGCTTGTTGGATATGGCGGAAGAAGTTTCAATTTCACTGACACGTTCAGGACAAGGACAAGGACAAGGTAATGTTGATTTGGCTCCAAATGATCCCATGCTTTCTGTGGTGGGAGGGAAGTTCCATGCATGTGGCATTAAGAGCTATGATCGTGGAGTGATTTGCTGGGGCTATAGTTTCAAAGCAGGCACCCCAGTTCCTAGTGGGATTAAGGTATTTGAGATTGCTGCTGGGAATTATTTTACCTGTGGAATACTTGTTGAGAAGTCTCTTATGCCTGTTTGTTGGGGTGTTGGCTTCCCTACCTCTCTCCCTTTGCCTGTCTCACCAAGAATGTGTAGGTCCACTCCATGTTCTCCAGGTTACTATGAAACTCAACAAAATGGTCTTTGCAAGTCCCCAGATTCCCATGTTTGCATGCCATGCAGTGCTGCTTGTCCTCCTGAGATGTATCAAAAAAGTGGATGCAATTTGAAATCTGACATACTATGTGAATATAATTGTTCTATTTGTTCCTCACCTGAATGCCTCTCCAATTGCTCCTCTTCCTATTCCAATGCTGCCTCTGGCAAGAAGAGTGAAAGATTTTGGTCTCTGCAGCTGCCAGTGATTATTGCTGAGATAGCTTTTGCTGTTTTCTTAGTTAGCATTGTGTCTATAACTGCTGGTTTGTATGTTCGCTACAAGCTAAGAGATTGTCAGTGTTCTTCAGTGAGAGGGTCAAAGGTGAAGAAACTAAAAGGGAGTTCCTCACACCAAAAGGAGAAATGCAAGGTCCGACCAGACTTGGAGGATGTCAAGATTAGGAGGGCACAGATGTTCCCCTATGAGGAACTTGAAAGGGCAACTAGTGGATTCAAAGAAGAGTCCATAGTGGGGAAGGGAAGTTTTTCTTGTGTGTTCAAAGGGGTTCTCAAAGATGGGACTGTTGTTGCTGTTAAAAGGGCCATAATGTCTCCCAACGTGCAGAAGGATTCCAAGGAGTTTCACACGGAGCTTGACTTGCTCTCTAGATTGCACAAGAAATCATCTCAAAGGTCTTCAAACAGGTCAGCCTCAGAAACTGATGTGGAGGATCAGAGGTTTGAGTTTAGAGCACCCTCATGGATCACTTTCCCCAGTGTCACTTCTTCTCAAAGAAGATCAGGCTCAGAGGCTGATGCTGAGGGGAAAAATGCAGAAGGGAGGCATTTGGGCAATGTTGGAGGTGGTGGTGATGTTTTGAGAAGTCTTGAGGAAGAGATTGGTCTTGCCTCTCCGAGAGAGAGACTGTTCTTGCAACACAACTTCTAA 1890 0.4519 MSSISISYGDKGSVFCGLKSDGSHTVNCYGMNSAIIYGTPTHFPFLGLTAGDGFVCGLLMSSSQPYCWGSSGHVEMGVPQPMVKGAQYLEISAGDYHVCGLRKPLTGRHRNTSLVDCWGYNMTKNYVFDGQVQSISAGSQFNCGLFSQNRTVFCWGDETSSQVIDMIPQGMRFQEISAGGYHVCGILEGVNSRAVCWGRSLLDMAEEVSISLTRSGQGQGQGNVDLAPNDPMLSVVGGKFHACGIKSYDRGVICWGYSFKAGTPVPSGIKVFEIAAGNYFTCGILVEKSLMPVCWGVGFPTSLPLPVSPRMCRSTPCSPGYYETQQNGLCKSPDSHVCMPCSAACPPEMYQKSGCNLKSDILCEYNCSICSSPECLSNCSSSYSNAASGKKSERFWSLQLPVIIAEIAFAVFLVSIVSITAGLYVRYKLRDCQCSSVRGSKVKKLKGSSSHQKEKCKVRPDLEDVKIRRAQMFPYEELERATSGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNVQKDSKEFHTELDLLSRLHKKSSQRSSNRSASETDVEDQRFEFRAPSWITFPSVTSSQRRSGSEADAEGKNAEGRHLGNVGGGGDVLRSLEEEIGLASPRERLFLQHNF 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0372 629 MobiDBLite consensus disorder prediction 539 558 - -
Ssu8g0372 629 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 316 363 IPR001368 GO:0005515
Ssu8g0372 629 MobiDBLite consensus disorder prediction 574 604 - -
Ssu8g0372 629 SUPERFAMILY Protein kinase-like (PK-like) 463 539 IPR011009 -
Ssu8g0372 629 Gene3D - 45 311 IPR009091 -
Ssu8g0372 629 SUPERFAMILY RCC1/BLIP-II 223 311 IPR009091 -
Ssu8g0372 629 Gene3D Phosphorylase Kinase; domain 1 459 543 - -
Ssu8g0372 629 PANTHER RECEPTOR-LIKE KINASE 1 539 - -
Ssu8g0372 629 Pfam Regulator of chromosome condensation (RCC1) repeat 132 162 - -
Ssu8g0372 629 SUPERFAMILY RCC1/BLIP-II 10 200 IPR009091 -
Ssu8g0372 629 PANTHER RECEPTOR-LIKE KINASE 537 629 - -
Ssu8g0372 629 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 537 629 - -
Ssu8g0372 629 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 539 - -
Ssu8g0372 629 ProSitePatterns Protein kinases ATP-binding region signature. 491 513 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0372 Ssu-Chr8 5920864 5923497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0372 506 629 Receptor kinase-like Gene Family AT3G59420 47.287 5.95e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0372 - - gmx:100807392 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2738 3 81620419 81623166 Ssu8g0372 8 5920864 5923497 PCT