Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0371 ATGAAAACAAAGTGGGCTTGCAGTTCTTTTAATCCTGCTTATAAACAAGATCATGATGATAATATAACTCGAGATTCTTCTGGAGGGGACACAATCCCATCAGGAATTCCTGCAGTATCGGTTGTGTCAGCTGATGAGCCCTATGTGGGCCAGGAGTTTGAATCTGAAGCTGCAGCACATGCATTCTATAATGCATATGCTACACGTGTTGGATTCATCATACGTGTTAGTAAGCTCTCACGATCGAGGCGTGATGGATCTGCTATTGGACGGGCTCTTGTTTGCAACAGAGAAGGTTACAGAATGCCTGACAAACGTGAAAAGATTGTAAGGCAAAGGGCAGAGACAAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTAAGTTCTGGTAAATGGGTTGTTACAAAGTTTATAAAGGAGCACACGCATCCCTTGACACCTGGAAAAGGTAGAAGGGATTGCATTTATGAGCAATATCCGAATGAACATGATAAAATTCGAGAACTATCTCAGCAGTTGGCTATAGAGAAAAAGCGATCTGCAACCTATAAAAGGCATCTTGAATTGATATTTGAGCACATTGAGGAGCATAATGATAGCCTTTCAAAGAAAATACAGCACATAGTAGACAGCGTGAAGGAGATGGAAACCAAAGAACAGCAGAGTCACAGATAG 681 0.42 MKTKWACSSFNPAYKQDHDDNITRDSSGGDTIPSGIPAVSVVSADEPYVGQEFESEAAAHAFYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNREGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFIKEHTHPLTPGKGRRDCIYEQYPNEHDKIRELSQQLAIEKKRSATYKRHLELIFEHIEEHNDSLSKKIQHIVDSVKEMETKEQQSHR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0371 226 Pfam FAR1 DNA-binding domain 62 148 IPR004330 -
Ssu8g0371 226 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 6 224 - -
Ssu8g0371 226 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 6 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0371 Ssu-Chr8 5915992 5917401 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu8g0371 FAR1 2.5e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0371 - - gmx:100806900 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0371 8 5915992 5917401 Ssu3g2742 3 81698634 81700020 PCT