Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0361 ATGGATAAGGACAAGTCTCTAGGTCACGGTGGAGGTTTGCCACCTCCATCGGGACGTTATTCAGGTTACTCGCCCACCGGAAGCGGGTTCAATGTGAAATCTGAGCTGTCGTCGTCGTCAACGACGTCGTATCCGCCGCTGGCTCCGGGAACCAGCTCCGAGTCTAGTCATTTTGGGCATGGAATGTCCACGGACTCCAGTGGGTTTAGTCATGATATTAGCAGAATGCCTGATAATCCCCCGAGAAATAGAGGTCATAGGCGTGCTCATTCGGAGATTCTCACCCTGCCGGATGATATTAGCTTTGACAGTGACCTTGGTGTGGTTGGAGGTGCTGATGGGCCCTCCTTCTCCGATGACGCTGAGGAGGACTTGCTTTCGATGTACCTCGATATGGATAAATTCAATTCGTCGTCGGCAACGTCCACGTTTCAAACAGGCGAGCCGTCTAATGCCGTGGCAGTGTCGGCTTCGACACCGGCATCGGGGGCACCCACCTCTTCTGCAGAGAATATTGTTATCGGTGCTAATGAAAGGCCCAGAGTTAGACACCAGCATAGTCAATCCATGGATGGGTCAACAACCATCAAGCCTGAGATGCTGGTCTCGGGTTCAGAAGACATGTCTGTGGCTGATTCCAAAAAAGCAATGTCCGCTGCCAAACTTGCTGAGCTTGCCTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCAAATAGGCAGTCTGCTGCAAGGTCAAAAGAGAGGAAGATGCGATACATTGCTGAGCTTGAAAGGAAGGTGCAAACATTGCAAACGGAAGCAACATCTTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAATGGCTTGAATTCTGAGAACAGTGAACTGAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAAGATGCACTAAATGACGCATTAAAAGAGGAAATTCAGCATTTGAAAATACTGACTGGGCAAGCTATGCCACCTAATGGAGGACCTATGATGAACTTTACTTCTTTTGGAGGGGGCCAGCAATTCTATCCCAGTAATCATGCCATGCACACCCTTTTAGCTGCACAGCAGTTTCAACAGCTCCAAATTCATCCTCAGAAGCAGCAGCATCAGTTTCAGCAGCTTCAGCAACAACAAATGCTACAGCAGCAGCAGCGGGAACAGCAGCACCAACAATCAAGTGatttgaaaatgagagaagCTACACCTACTCCATGCCCCACAGATAATACTTCGTCAGATGTCAATACTTCAGGGGCCCAGGACTGTTGA 1287 0.4848 MDKDKSLGHGGGLPPPSGRYSGYSPTGSGFNVKSELSSSSTTSYPPLAPGTSSESSHFGHGMSTDSSGFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDAEEDLLSMYLDMDKFNSSSATSTFQTGEPSNAVAVSASTPASGAPTSSAENIVIGANERPRVRHQHSQSMDGSTTIKPEMLVSGSEDMSVADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQAMPPNGGPMMNFTSFGGGQQFYPSNHAMHTLLAAQQFQQLQIHPQKQQHQFQQLQQQQMLQQQQREQQHQQSSDLKMREATPTPCPTDNTSSDVNTSGAQDC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0361 428 MobiDBLite consensus disorder prediction 1 88 - -
Ssu8g0361 428 Pfam bZIP transcription factor 231 289 IPR004827 GO:0003700|GO:0006355
Ssu8g0361 428 MobiDBLite consensus disorder prediction 377 428 - -
Ssu8g0361 428 SMART brlzneu 227 291 IPR004827 GO:0003700|GO:0006355
Ssu8g0361 428 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700|GO:0006355
Ssu8g0361 428 MobiDBLite consensus disorder prediction 21 73 - -
Ssu8g0361 428 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 419 - -
Ssu8g0361 428 Coils Coil 247 316 - -
Ssu8g0361 428 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700|GO:0006355
Ssu8g0361 428 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 419 - -
Ssu8g0361 428 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700|GO:0006355
Ssu8g0361 428 Gene3D - 230 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0361 Ssu-Chr8 5848969 5852077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0361 19 360 bZIP Transcription Factor Family AT1G06070 71.930 7.09e-170 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu8g0361 bZIP_1 4.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0361 - - gmx:100786738 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0361 8 5848969 5852077 Ssu3g2748 3 81782125 81785804 PCT