Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0359 ATGCCGCTTCCTTCGAAATCCGTGGAAGGCGAGGAGTGGGTAACGCCCACCAACAACCTCTGGGTCGGGAATCTGCCGCCGGAAGTCACCAATTCCGATCTCATGGACCTCTTCGCTCCGTGCGGCGCTCTCGACACACTCATCTCCTATTCCTCGCGCACCTTCGCTTTCGTGCTCTTCAGGCGCGTCGAAGACGCTAAGGCCACGAAAACCAACTTGCAAGGCGCTTCGCTGCGCGGAATTCAAATCAGAATCGAGTTTGCCAGACCGGCGAAGCCGTGTAGACAGTTATGGGTGGGTGGTGTTAGTCACGCCGTTACGAAGGAGGATTTGGAAGCGGAATTTCGCAAATTCGGTAAGATTGAGGATTTTAAGTTCTTCAGAGACCGCGGTACTGCGTGTGTTGAGTTTCTCAATTTGGATGATGCTACGCGGGCCATGAAAGTCATGAACGGGAAGCGTTTGGGTGGAGGACAGATTTGTGTGGACTTCCTTCGATCACAATCTACGAAAcgaGATCTTTTGGTTGATCATGGGCAGTTTCAGGCTAGACCGCAGCATTTACAACCTTCAATGGGGAGGAATAGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCTTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCATTGATGAAGCTCGGCGTGCCAAAGAGGGTCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACGATTATGTATTCGAGCAGTGAGCTGGCACCTGGCAAAGATTACCCAGGCTTTTATCCTGGAAGTAAAGGGCCTGTACCTGATGGATTAGTTAATGAGCATCCATTTCGATCACTACAAATGGATGTATTTGGTCATAATCGTCCTATGGTTCCAAATAATTTTCCTGGACAATTGCCACCTGGTGGTATTACTGGACCTAATGTCCCAATGCAACCTTTTGGTCCTCAAGGTCTTGAACCCCTTATCTCTGGTCCTGATTTTAATGAGATGGGCACAGTCCACAAATTTCAGGATGGTAGCTCTAAAAGTCAGATGGGTCCAAGCTGGAAAAGGCCATCTTCTCCTGCCCCAGGAATGCTTCCTTCTCCTATGCCTGGTATTAGGCCTCCTACAAAATCCGCCTCTGGTGCATGGGATGTACTTGACATAAACCAATTTCAGAGAGATTCTAAACGTTCAAGGATAGATGATGGTGATGCTCCATTTCCTTTAAGGAATATAGATGATCGTGGATTGGGACTAGAACAACCATTTGCAATTGATCCAGTTATTGATGGAGGTGGTTCTGGTCCAAAGAGCCACCGGGGTCCAGTCGGCACTAGGATCACATCTGGAGTACTTGGTGTTGTCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTACCTATTAGAAAAGGGATAGGGAATGAGATTCCTGATGTTGTAGATTGTGCTGCTAGGACTGGATTGGATATGCTTACAAAACACTATGCTGATGCAATTGGCTTTGACGTTGTTTTCTTTCTGCCTGATAGCGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGCTACCTCAAAGCAAAAAACCGTGCTGGTGTTGCCAAGTTTGCTGATAACACCACTTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGTTTATATGGTGTGGTTCTTAAATTTCCATTAGTTCCAACTAGCACATCTATGCAACAAACAATGCATTTACCTTCACCCTCTACTCAGTATACGCAACAGATTCCCCCTTCACAAGCTGAGTATGGTTCAATCTCTGTAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGTTGCATGAGGATTCTAAGCGTCCACCAAAACCATTTCATTCAGCTACAGGTGTCCCCCCTTCAGCTCATTCTGTTCCTCCTGATTATGCTCCTACTTATACAGCTTCTGCATCCCAAGCTGGAGTTACATTGACACCTGAACTTATTGCAACTTTAACTTCTTTACTCCCTGCAACTACACAATCATCAACCACTGGTGGCACAATGACAGTGGTTGGTCCCTCTACTGTGAAGCCACTTTTTCCTCCTGTTGTACCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCTGCAATTTGCAGATGCACCTAGTCAGCCTCCTCAACAGTTAGGGAATTTTCAATATACTCAATATCAACCTTATCCATCTGCATCTTCTACTGACCAACCTGCTCAAGTGATCTCTGGAAGTTCTCGTTTCCAAGATACTGCTTCCACTCTTCAGCATCTAGGTGCTGTTTCCTCTACACCCATGACTAGTTTCACCACACCTCATAATGGACAGGTAGCTGTGTCCCCTCAAGTCAGTCAACAGTATCAGGTGGAAGTCCCCCACGTCACTGAGAAAGGCTATGGAGTGGTTCAGGGAACAGATGCCTCTGTTTTATATAGTTCTAAAGCATTCCAGCaacctaataattttattcccTCACCCAACCAAGTTTCCAATTCTGCTTCACAGCAACAAACTGTGATGCCCTATACAGTGGACAAAGTTAATTCAGAGCCCCCAAATCAGCAACTTCAACCTGCTTTATTTGGAGTTGGCCAGGGAATGTCAGAATTGGAGGCTGATAAGAACCAGAGGTATCAGTCAACACTACAGTTTGCTGCCAACCTGCTCCTCCAGATACAGCAAACACAAGGAGGGCATGGGCCTGGAAATCAACAATAA 2868 0.447 MPLPSKSVEGEEWVTPTNNLWVGNLPPEVTNSDLMDLFAPCGALDTLISYSSRTFAFVLFRRVEDAKATKTNLQGASLRGIQIRIEFARPAKPCRQLWVGGVSHAVTKEDLEAEFRKFGKIEDFKFFRDRGTACVEFLNLDDATRAMKVMNGKRLGGGQICVDFLRSQSTKRDLLVDHGQFQARPQHLQPSMGRNSQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGFYPGSKGPVPDGLVNEHPFRSLQMDVFGHNRPMVPNNFPGQLPPGGITGPNVPMQPFGPQGLEPLISGPDFNEMGTVHKFQDGSSKSQMGPSWKRPSSPAPGMLPSPMPGIRPPTKSASGAWDVLDINQFQRDSKRSRIDDGDAPFPLRNIDDRGLGLEQPFAIDPVIDGGGSGPKSHRGPVGTRITSGVLGVVQPDIDHIWRGIIAKGGTPVCRARCVPIRKGIGNEIPDVVDCAARTGLDMLTKHYADAIGFDVVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFADNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPLVPTSTSMQQTMHLPSPSTQYTQQIPPSQAEYGSISVKEEQVLPMDYNRLLHEDSKRPPKPFHSATGVPPSAHSVPPDYAPTYTASASQAGVTLTPELIATLTSLLPATTQSSTTGGTMTVVGPSTVKPLFPPVVPNDGNQSHLWKQDLQFADAPSQPPQQLGNFQYTQYQPYPSASSTDQPAQVISGSSRFQDTASTLQHLGAVSSTPMTSFTTPHNGQVAVSPQVSQQYQVEVPHVTEKGYGVVQGTDASVLYSSKAFQQPNNFIPSPNQVSNSASQQQTVMPYTVDKVNSEPPNQQLQPALFGVGQGMSELEADKNQRYQSTLQFAANLLLQIQQTQGGHGPGNQQ 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0359 955 Pfam SPOC domain 480 596 IPR012921 -
Ssu8g0359 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Ssu8g0359 955 SUPERFAMILY RNA-binding domain, RBD 185 273 IPR035979 GO:0003676
Ssu8g0359 955 MobiDBLite consensus disorder prediction 658 685 - -
Ssu8g0359 955 Gene3D - 5 92 IPR012677 -
Ssu8g0359 955 CDD RRM3_Spen 97 166 - -
Ssu8g0359 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Ssu8g0359 955 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 9 955 - -
Ssu8g0359 955 PANTHER RNA RECOGNITION MOTIF-CONTAINING 9 955 - -
Ssu8g0359 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 83 IPR000504 GO:0003723
Ssu8g0359 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 158 IPR000504 GO:0003723
Ssu8g0359 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Ssu8g0359 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Ssu8g0359 955 Gene3D - 179 276 IPR012677 -
Ssu8g0359 955 Gene3D - 93 173 IPR012677 -
Ssu8g0359 955 SUPERFAMILY RNA-binding domain, RBD 11 93 IPR035979 GO:0003676
Ssu8g0359 955 MobiDBLite consensus disorder prediction 381 395 - -
Ssu8g0359 955 CDD RRM3_Spen 20 89 - -
Ssu8g0359 955 SUPERFAMILY RNA-binding domain, RBD 92 171 IPR035979 GO:0003676
Ssu8g0359 955 MobiDBLite consensus disorder prediction 364 405 - -
Ssu8g0359 955 SMART rrm1_1 96 163 IPR000504 GO:0003723
Ssu8g0359 955 SMART rrm1_1 201 269 IPR000504 GO:0003723
Ssu8g0359 955 SMART rrm1_1 19 86 IPR000504 GO:0003723
Ssu8g0359 955 CDD RRM3_Spen 202 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0359 Ssu-Chr8 5825432 5830015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0359 97 268 Eukaryotic Initiation Factors Gene Family AT4G34110 28.415 4.99e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0359 - - gmx:100806555 1612.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0359 8 5825432 5830015 Ssu3g2751 3 81805796 81812375 PCT