Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0354 ATGGACATAAGTCCTTACACCCCAAAGAAACTTTCATCATCACACTTGAGCGTCCACTCCAATAATAACCACCATCAGCACCACCACAATACCAACAACATTACCGATGAGGCTTCATCAGCAAAAGCAATAGACATGCACCGCAGCAGCAACCAGAGCCACACGTCCACGAGCCGCTCTTCGGACTCGAGCGAGCCCAGCGAGGACGGTAAATGGGCCCCCAAGCTTCTCAGAGAGTGTGCCAAAGCCATATCAGAGAGGGACTCAACGAAAACACACCATCTCCTGTGGATGCTAAACGAGCTGGCTTCACCCTACGGAGACTGCGATCAGAAACTCGCTTCCTATTTCTTGCAGGCCCTATTCTGCAGGGCCACGGAGTCAGGTGAGAGATGCTACAAGACACTCTCCTCCGTGGCCGAGAAAAACCACTCGTTCGATTCGGCGAGGAAGCTGATACTCAGGTTTCAAGAGGTGAGCCCCTGGACGACGTTCGGACACGTGGCGTCCAACGGCGCCATCCTGGAGGCCTTGGAAGGCGAGCCGAAGCTCCACATCATCGACATCAGCAACACGCTTTGCACGCAGTGGCCAACCCTGTTGGAAGCGTTGGCCACGCGAAACGACGAAACCCCGCACCTCAAGCTGACGGTGGTGGCACTGGCGGGGTCCGTGATGAAGGAGGTTGGTCAACGGATGGAGAAGTTCGCGAGGCTCATGGGCGTGCCCTTTGAATTCAACGTGATCAGCGGGCTGAGCCAAATCAGCAGGGAGGGGTTGGGGGTCCAAGAGGACGAAGCCATAGCCGTGAACTGCGTTGGGGCGTTGAGGAGAGTGGAAGTTGAAGAGAGGGAGAATTTGATTCGCGCGTTTAAGTCTCTCGGCCCTAAAGTGGTGACCGTGGTTGAGGAGGAGGCTGATTTGTGCAGCTCGAGGGAGGACTTCGTCAAGTGTTTCGAGGAGTGTCTGAGGTTCTACACTCTCTACTTCGAGATGCTGGAGGAGAGTTTTCCAGCAACGAGCAACGAGAGGTTGATGCTGGAGAGGGAGTGCTCGAGGAGCATAGTTAGGGTTTTGGCTTGCTGCGGCGATGATGAGTTTGATTGCTGTGAGACAAGGGAGAGAGGGACGCAATGGTGTGAGAGGCTGAGGAATGCGTTTTCGCCGGTTGGGTTCAGCGATGATGTGCTGGATGATGTGAAAGCGTTGCTCAAGAGGTACCAACCAGGGTGGTCGCTTCTGGCGTCTCAAGGAGATGATCATCTCTCGGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTTTGGGCATCAGCATGGAAACcctag 1329 0.5455 MDISPYTPKKLSSSHLSVHSNNNHHQHHHNTNNITDEASSAKAIDMHRSSNQSHTSTSRSSDSSEPSEDGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSARKLILRFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTVVALAGSVMKEVGQRMEKFARLMGVPFEFNVISGLSQISREGLGVQEDEAIAVNCVGALRRVEVEERENLIRAFKSLGPKVVTVVEEEADLCSSREDFVKCFEECLRFYTLYFEMLEESFPATSNERLMLERECSRSIVRVLACCGDDEFDCCETRERGTQWCERLRNAFSPVGFSDDVLDDVKALLKRYQPGWSLLASQGDDHLSGIYLTWKEEPVVWASAWKP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0354 442 ProSiteProfiles GRAS family profile. 64 441 IPR005202 -
Ssu8g0354 442 MobiDBLite consensus disorder prediction 46 72 - -
Ssu8g0354 442 PANTHER PROTEIN SHORT-ROOT-LIKE 44 441 - -
Ssu8g0354 442 MobiDBLite consensus disorder prediction 46 63 - -
Ssu8g0354 442 MobiDBLite consensus disorder prediction 1 32 - -
Ssu8g0354 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 44 441 IPR005202 -
Ssu8g0354 442 Pfam GRAS domain family 75 441 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0354 Ssu-Chr8 5760878 5762206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0354 50 442 GRAS Transcription Factor Family AT4G37650 53.237 4.90e-147 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu8g0354 GRAS 1.3e-96 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0354 - - gmx:100818806 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0354 8 5760878 5762206 Ssu8g0354 8 5760878 5762206 ECH
Ssu4g3134 4 79444082 79445812 Ssu8g0354 8 5760878 5762206 PCT