LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g0347	ATGGAATACCCTTTTTCCCCCAGTGGAGGAGGAATTGGGGATTGGCAATCTTCTAGAGCTCAGTTGGAGGGATCGACAGCATTAGATGGTGGAATGAGCAATTCAATATCAGAGGATATGACCAATAGCTTATCTGAGCTCATGAACTTTGATGCTTATGCTGGTTTGTGCAATAGCCCATCCATAACGGATCAGATTTTGGCTAATGAGCTTCCAGCATTTGCCTCATTATCATATCCATTGCCCGATGGATTCAATCTAGTCCAACAGAACAGTGGGCAATGCTATACGTCAGGAGTTGACAGAAATAACAATGATATGGAAAGCTCCCCCATTTATGGGGAGAAAGTTGTGGGTCAGCAAATGGACACCCTACTGGGTTTCTTCAATGACACAAATGATGCAAATAACTTGAAttctaagataaaaattaatggcTCTTCTCAACATCTTAATGCCTCTGATACAGGCAATTATATAATGTCCAGGCCACCTGGTTTGTCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTGCCCAAAAAGCATGGTGATCAATTCATCTTAAGCACGAGTGATCAACCTTATTTGCTAGATCAAATGCTCGCAGGGTATCGTGAAGTTTCCAGGACATTTACATTTTCTGCAGAAGGAGAATCTGGTTGTTTCCTAGGACTTCCTGGGCGTGTTTTTACCTCCAAAGTTCCTGAGTGGACTTCAAATGTTGGTTATTACAGTATGAATGAGTACTTAAGGTTCGAGCATGCAATTAATCACAAGGTTCGTGGATCAATTGCATTTCCCATATTTGATCTGCACTCTGAGCTGCCATGTTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCCAGATTTTGACAGAGAATTGGAAATTGTTTGTCGTGCACTCCAGTTTGTAAATTTAAGGACTACTAAGCCTCTCCGACTTCTTCCCCAGTGTCTTTCAGACAACAAAAAAGCTACTTTGACCGAGATAGTTGATGTGTTACGATCTGTCTGTCATGCACATAGATTACCGCTGGCACTGACATGGATTCCCTGTTACACTGAGGGCTCAAGAGGTGAAGCTATAGGACTACAAATTAAAGAGGGTTATTCAACTTCTAGAGAAAAAAGCATACTGTGCATTGAAGAATCAGCTTGCTATATAACTGATAGAACAATGGCAGGATTTGTTCGTGCATGCATGGAACATCATCTTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAAACATCCTTTCTTCTATCCTGATGTGAAGACGTATGATATTAGTGAATATCCACTTGTCCATCATGCGCGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAGAGGGAGTTCAGAGCAACAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAATTATCAGGAATAGAAAGCTCACAAGTGGAgtttggaaagaaaaatgtccccagtttttttcctttgtcaAGTAGAAACTctcaaatacaattaataaatgGTGACTGGGATTCTGTCCAGAAGATGTCATCGAAGGCAACTAACCTAAGAAACAATGAAATTGAGCCTTCTCCTAACCAGgaaagaaatagatcaAAAAGACAGGTCCAGAAAAATAGAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACGATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAACATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGCAACATGGAATTTCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGATCATTGAAGAAGATACAGACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCCTCTATGGGGGCATTTGTGGCAGGAGGGTCAATAATCCAGGAAATTGATGCACATGAAAGTCTTCTGTTTCCTGAGAAAAGTACTATAAAAGACCCTGCGCCTGTTACACAAGATGCAGTCTCAGTACCACCTGCACCTTGTTGTGCAGGTGAGAATTTTTCAATTAAGTTGGAGGGAAAATTGAAGAAAACCAATGCTTCTTCAGTTGATTGTGATGAAGATCCAAAATCAATGGCAATGGATGATGGGTCGTGCCAGACAGCAAGCCTTTGCACCAAGGTGCAGGATTGTCCTGAACAAGCTTGTTTGGGTTCTTTTCTTGCAAAAGAACAGCATAAATGGATTCTGAACAAGGGTGGTTTGagagtagaaaaatttaaacgCAATATTGTTGGCCAGAGTTCAAGCTCCTTGATTGGTGATGAGATGGACATTGGTGTAGATGGGGATGATGGGGTTGTTGAACCTAACCACCCTACTTCCTCAAGCTTGACAGACTCATCTAATGGCTCTGGTTCAATGATGCATGGCAGTTCATCAAGTTCTCAGAGCTTCGAGAACCAGAATCAGTCCAAAGTCAAATCAACCATTGTTGATAGTGGGTCAAAACTAATAGTCAAAGCCACCTATAGAGAAGACACCATTCGTTTCAAGTTTGATCCGTCTGCAGGTTGTTTCAGGCTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAAGTGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACGCTGATTTGCAAGAGTGCATGGAAATATTGGATGATATTGGCACTCGTAGCGTGAGGTTTCTTGTTCGTGATATGCCTTGCGTTTTAAGCAGTTCTGGCAGTAGCAGTTGCTACTTGGGAGGCAGCTCATAA	2937	0.4045	MEYPFSPSGGGIGDWQSSRAQLEGSTALDGGMSNSISEDMTNSLSELMNFDAYAGLCNSPSITDQILANELPAFASLSYPLPDGFNLVQQNSGQCYTSGVDRNNNDMESSPIYGEKVVGQQMDTLLGFFNDTNDANNLNSKIKINGSSQHLNASDTGNYIMSRPPGLSLDERMLRALSFFKESAGGGILAQVWVPKKHGDQFILSTSDQPYLLDQMLAGYREVSRTFTFSAEGESGCFLGLPGRVFTSKVPEWTSNVGYYSMNEYLRFEHAINHKVRGSIAFPIFDLHSELPCCAVLELVTTKEKPDFDRELEIVCRALQFVNLRTTKPLRLLPQCLSDNKKATLTEIVDVLRSVCHAHRLPLALTWIPCYTEGSRGEAIGLQIKEGYSTSREKSILCIEESACYITDRTMAGFVRACMEHHLEEGKGIAGKALQSKHPFFYPDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSLRTVSDAELSGIESSQVEFGKKNVPSFFPLSSRNSQIQLINGDWDSVQKMSSKATNLRNNEIEPSPNQERNRSKRQVQKNRSTSEKNVSLSVLQRYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGAFVAGGSIIQEIDAHESLLFPEKSTIKDPAPVTQDAVSVPPAPCCAGENFSIKLEGKLKKTNASSVDCDEDPKSMAMDDGSCQTASLCTKVQDCPEQACLGSFLAKEQHKWILNKGGLRVEKFKRNIVGQSSSSLIGDEMDIGVDGDDGVVEPNHPTSSSLTDSSNGSGSMMHGSSSSSQSFENQNQSKVKSTIVDSGSKLIVKATYREDTIRFKFDPSAGCFRLYEEVAARFKLQSGSFQLKYLDDEEEWVMLVNDADLQECMEILDDIGTRSVRFLVRDMPCVLSSSGSSSCYLGGSS	978

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g0347	978	MobiDBLite	consensus disorder prediction	580	596	-	-
	Ssu8g0347	978	MobiDBLite	consensus disorder prediction	568	601	-	-
	Ssu8g0347	978	ProSiteProfiles	RWP-RK domain profile.	578	670	IPR003035	-
	Ssu8g0347	978	PANTHER	PLANT REGULATOR RWP-RK FAMILY PROTEIN	5	975	-	-
	Ssu8g0347	978	Pfam	RWP-RK domain	602	650	IPR003035	-
	Ssu8g0347	978	Pfam	PB1 domain	881	959	IPR000270	GO:0005515
	Ssu8g0347	978	ProSiteProfiles	PB1 domain profile.	878	960	IPR000270	GO:0005515
	Ssu8g0347	978	SMART	PB1_new	878	960	IPR000270	GO:0005515
	Ssu8g0347	978	MobiDBLite	consensus disorder prediction	831	867	-	-
	Ssu8g0347	978	PANTHER	PROTEIN NLP8	5	975	IPR045012	GO:0003700
	Ssu8g0347	978	Gene3D	-	875	958	-	-
	Ssu8g0347	978	MobiDBLite	consensus disorder prediction	823	867	-	-
	Ssu8g0347	978	CDD	PB1_NLP	879	959	IPR034891	-
	Ssu8g0347	978	SUPERFAMILY	CAD & PB1 domains	873	962	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g0347	Ssu-Chr8	5679701	5685220	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g0347	1	975	NLP Transcription Factor Family	AT2G43500	50.051	0.0	843

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Ssu8g0347		PB1	3.8e-17	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g0347	-		-	gmx:100804426	1619.75

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu8g0347	8	5679701	5685220	Ssu3g2762	3	81914710	81919113	PCT