Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0338 ATGAATTGCTTATGTGAGAAAGACTCTGGTCTATTTACTTCTCATTCAACATCCCCCTATGTTCTTGGATGCCCATCATGGGGTGCTTCTGAATCTGAAGTCCAACCATCATCTATTTCCAAAAGTTTGGGCTTGAAAGTGGATGTTCTGCCACAACAATGCCACAAGAGCAAGACATTGAGTTTTCAATTCCAAGAACAGGATTCATCTTCAACTCAATTCACTGATCAATCTTGTCCTGAAGTTGGTTCAGCACAATCTGGTCAAATTTCTGTCCAGCATAGTTCTTCTACTGGTTCAACACTTAGCAGAGCTGGGGGAAAGAGTATGGGTTGTGCCATCAGGTCATTTGTGGGGAGTCAGGATTTCACCTTCCCTCCTCCACTACTGGATCACACTCAATCACTTGCTCATATTGCATGTCACTATGCTGACCCATGCTATAGTGGCCTAATGGCTGCTGTATATGGTCCACAGTCTAAGCCAATGGAAACTGCACCTGTTCGAATTCCTCTGCCATTGGATGTTACAGAAGAACCCATATATGTGAATTCAAAGCAGTACCACGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTCGAAGCACACAACAAACCCATCAAGGATCGGAAACCGTATCTTCACGAGTCCCGCCATCTACATGCATTAAAGAGAGCTAGAGGCGCTGGTGGGCGCTTTCTTAATACCAAAAAGCTCCAACACTCAAAGCTTGCTTCAGCAAATCACGGCCTCTCTCGTATAAATTTGAGTGGAAACATGGCAGAATCTAAAATGCATCAAAGAGGTGTTGCTGATGTCACATATGCATGTAACAGTGATGGTTACCCCTCTCACGCTGCTAGGGATATGCAGAACATTACAGCTGATAAGGGTGGTGGCGCCACTCAGCGCCCTCTATCTGTCTACATGTGA 936 0.4498 MNCLCEKDSGLFTSHSTSPYVLGCPSWGASESEVQPSSISKSLGLKVDVLPQQCHKSKTLSFQFQEQDSSSTQFTDQSCPEVGSAQSGQISVQHSSSTGSTLSRAGGKSMGCAIRSFVGSQDFTFPPPLLDHTQSLAHIACHYADPCYSGLMAAVYGPQSKPMETAPVRIPLPLDVTEEPIYVNSKQYHAILRRRQYRAKLEAHNKPIKDRKPYLHESRHLHALKRARGAGGRFLNTKKLQHSKLASANHGLSRINLSGNMAESKMHQRGVADVTYACNSDGYPSHAARDMQNITADKGGGATQRPLSVYM 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0338 311 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 23 273 IPR001289 GO:0003700|GO:0006355
Ssu8g0338 311 MobiDBLite consensus disorder prediction 72 105 - -
Ssu8g0338 311 SMART cbf3 176 237 IPR001289 GO:0003700|GO:0006355
Ssu8g0338 311 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 23 273 - -
Ssu8g0338 311 PRINTS CCAAT-binding transcription factor subunit B signature 180 202 IPR001289 GO:0003700|GO:0006355
Ssu8g0338 311 PRINTS CCAAT-binding transcription factor subunit B signature 211 234 IPR001289 GO:0003700|GO:0006355
Ssu8g0338 311 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 179 234 IPR001289 GO:0003700|GO:0006355
Ssu8g0338 311 MobiDBLite consensus disorder prediction 72 106 - -
Ssu8g0338 311 ProSitePatterns NF-YA/HAP2 subunit signature. 182 202 IPR018362 GO:0003677|GO:0016602
Ssu8g0338 311 ProSiteProfiles NF-YA/HAP2 family profile. 177 237 IPR001289 GO:0003700|GO:0006355
Ssu8g0338 311 Gene3D - 177 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0338 Ssu-Chr8 5576208 5579296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0338 12 268 CCAAT-HAP2 Transcription Factor Family AT1G17590 44.195 4.50e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ssu8g0338 CBFB_NFYA 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0338 K08064 - gmx:100803893 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0338 8 5576208 5579296 Ssu8g0338 8 5576208 5579296 ECH
Ssu3g2821 3 82605578 82615693 Ssu8g0338 8 5576208 5579296 PCT