Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0337 ATGGAGGCGCGAATTCGCTCCGTCGAAGACATATTTGAGGATTTCAAGGGCCGAAGAGCCGGCATCATCAAGGCCCTTACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAATGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTATCCCTGGCCTTTTATTTTGGGGCCAGATTTGGTTTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAActaccaacaatatttgaagtTGTTACTGGTGCAGCTAAGAAACAAGTTAAAGAAAAGTCTTCAGTTTCAAACAACATTGGCAGCAAATCTAAGTCTCACTCTAAATCGCGGGCTTCCAAAACCCAGGGTATACAGTCAAAGGCATTACAATCAAAAGATGAGGATGAAGGACTAGAAGAGCAAGATGACGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACTCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCTAA 747 0.423 MEARIRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGLPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFGFDKTDRKRLFSMINELPTIFEVVTGAAKKQVKEKSSVSNNIGSKSKSHSKSRASKTQGIQSKALQSKDEDEGLEEQDDDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0337 248 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Ssu8g0337 248 PANTHER CPG BINDING PROTEIN 1 248 IPR045104 GO:0006355|GO:0042393
Ssu8g0337 248 MobiDBLite consensus disorder prediction 144 191 - -
Ssu8g0337 248 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Ssu8g0337 248 CDD PHD_AL_plant 195 245 IPR044104 -
Ssu8g0337 248 SMART PHD_3 195 243 IPR001965 -
Ssu8g0337 248 MobiDBLite consensus disorder prediction 144 173 - -
Ssu8g0337 248 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 248 - -
Ssu8g0337 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Ssu8g0337 248 Pfam PHD-finger 196 245 IPR019787 -
Ssu8g0337 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Ssu8g0337 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0337 Ssu-Chr8 5568692 5573499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0337 6 248 Alfin-like Transcription Factor Family AT3G42790 74.897 1.31e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ssu8g0337 Alfin 6.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0337 - - gmx:100170696 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3167 4 80185185 80189183 Ssu8g0337 8 5568692 5573499 ECH
Ssu8g0337 8 5568692 5573499 Ssu8g0337 8 5568692 5573499 ECH
Ssu8g0337 8 5568692 5573499 Ssu4g3167 4 80185185 80189183 PCT