Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0336 ATGAACTTTGGTGCAGCCGAGGAAGAATCGGCTGCACAAATTCGCGTCCCTGCGGAAATCGATTGGCAAAAGCTTGACAAATCAAAGTTTTTCTGCCTCGGTGCAGCCCTTTTCTCTGGGGTTTCTGCAACCCTCTACCCTGTTGTCGTGTTGAAAACGCGCCAACAAGTTTCCCCATCTCAACTTTCTTGCATCAGAACCGCGTTTTCATTGATCAGGCTTGAGGGTTTTACAGCACTGTATAGAGGGTTTGGTACTTCTTTGACGGGTACAATCCCTGCTAGGGCTTTGTACATGGCTGCCCTTGAGATCACCAAGAGTAATGTAGGCACTGCCGCCCTTAGGTTTGGGGTGGCTGAACCCACTGCTGCCACTATTGCCAATGCTGCTGCTGGGTTGAGTGCAGCCATGGCAGCTCAGCTTGTGTGGACCCCAGTTGATGTTGTGAGTCAGAGGCTGATGGTTCAGAGTGGTTCTAGGTGTAATTCACCACCTCAATATATGAATGGAATTGATGCCTTCAGGAAAATTCTCAAGAATGATGGGGCTAGGGGGCTGTATAGGGGTTTTGGGATATCAATTTTGACCTATGCACCTTCAAATGCTGTTTGGTGGGCTTCATATTCTGTGGCACAGAGGATGGTTTGGGGTGGGGTTGGCTGGTGCTTGTGCAGCAAaaaaggtggtggtggtgagagTGAATTGAGGCCTGATTCTAAGACAGTGATGGCTGTTCAGGGAGTGAGTGCAGCAATGGCTGGTGGCATGTCTGCTTTGATTACCATGCCACTGGACACCATCAAGACAAGGCTGCAGGTGTTGGATGGGGATGAGAATGGGCGCCGTGGACCCACGGTTATGCAGACGGTGAGGAATTTGGTTAGGGAGGGTGGTTGGATGGCATGTTATAGAGGGTTGGGACCTAGATGGGCTTCAATGTCAGTGTCTGCAACAACAATGATCACTACTTATGAGTTCCTTAAACGACTTTCCACCAAAAATCAAGAGGTTTTCACTTGA 1020 0.4824 MNFGAAEEESAAQIRVPAEIDWQKLDKSKFFCLGAALFSGVSATLYPVVVLKTRQQVSPSQLSCIRTAFSLIRLEGFTALYRGFGTSLTGTIPARALYMAALEITKSNVGTAALRFGVAEPTAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQSGSRCNSPPQYMNGIDAFRKILKNDGARGLYRGFGISILTYAPSNAVWWASYSVAQRMVWGGVGWCLCSKKGGGGESELRPDSKTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMQTVRNLVREGGWMACYRGLGPRWASMSVSATTMITTYEFLKRLSTKNQEVFT 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0336 339 Pfam Mitochondrial carrier protein 125 215 IPR018108 -
Ssu8g0336 339 Pfam Mitochondrial carrier protein 35 108 IPR018108 -
Ssu8g0336 339 Pfam Mitochondrial carrier protein 244 334 IPR018108 -
Ssu8g0336 339 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 336 - -
Ssu8g0336 339 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Ssu8g0336 339 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Ssu8g0336 339 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 330 IPR018108 -
Ssu8g0336 339 Gene3D Mitochondrial carrier domain 29 338 IPR023395 -
Ssu8g0336 339 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 214 IPR018108 -
Ssu8g0336 339 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 108 IPR018108 -
Ssu8g0336 339 SUPERFAMILY Mitochondrial carrier 23 327 IPR023395 -
Ssu8g0336 339 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0336 Ssu-Chr8 5565199 5566218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0336 1 338 Chloroplast and Mitochondria Gene Families AT1G72820 72.779 3.33e-180 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0336 K15121 - gmx:100803360 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3170 4 80230808 80231839 Ssu8g0336 8 5565199 5566218 ECH
Ssu8g0336 8 5565199 5566218 Ssu8g0336 8 5565199 5566218 ECH