Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0333 ATGCTAAAGTTGGGTTTACAGTTGGATCCAACTCAGATTTTTGTCAAACCAGCACCGCTCTCAATCATGGGTTCAAATGCAGAAGAAGAAGATTCCACCGTCATCGCCATTGATAGCGACCGGAACAGCCAACACGCCGTCATGTGGGCTGTGGAACATCTTTTGAAGAAGAACGCCTCTTGCACCCTCATTCACGTCAGAACCAAGGCCTTGTATCCCCATGATATTGATGCTTCCCCTCCACAAGGTCGTCCACTAACCGAAGAAGAATTGCACCagttttttcttccctttcgaGGATTTTGTGCTCGAAAAGGGATCGCAGCAAAGGAGTTAGTCTTGCATGATGTTGACGTTTCAAATGCGCTTACTGATTACATCATTGACAACTCTATCAGCAATATTGTTGTTGGCGCTTCCCGCTGGAATGCTCTTATAAgGAAATTTAAGGATGTAGACGTGCCAACAAGCTTAGTCAGGTCTGTGCCAGAGTCTTGCACGGTGCATGTTATATCAAAAGGAAAAGTGCACAATATTCGACCAGCAGATGTTCTTGCATTTTATGTGTAcagaaaatcaaaatcattcaAGTATTTACTTTGGCTAGGCTCAAGCAATGATGGGGTTTCTTCTGGTCGAAACAAGGATGCTACACAGGTGACACCACGTATGACCCATGGACAGACTACTTCACCAAAACTATCGGACTGCTCCTCACAAAATTCATCTAATCGAAGTTCCCTCACACGTGACACTTCAAGGCTGCTTGGTTATCAATTGACCGAGACGTCACATGAAAACCAAGATGTAGTCGAGAATTCAAATAGTTGCACTTGGAGGAGCAAATCTTCTAAAAGGTCCCCAGCAATGAAGCTTGAAAGGTTTAGGCAAGAAGAAGGGAACGTAGAAAAAGGTTGGTTTGCTGAAGAGGCTACATTGGCTTTGGCAGAGGTAGAGAGGCAGCAAACCAAGGCAGTGATGGAGTCAGCTGAAATGTCAAAACGCCTAGCAGAAATGAAGGGCCAGAAGGAGAAGCAGATTGAAATAGGAGCCATGCATGAGGAAGAAGAGAGGAATAGAGCTTTAAATGCAAGTGCACATaacaaaattctatttaaaagatacaatattaaagaaattgaagttGCAACTCATTACTTTGACAATGCCCTCAAAATTGGTGAAGGTGGATATGGACCTGTTTTTAAAGGGGTGCTGGATCACACTAATGTTGCCATTAAGGCCCTGAGACCAGACATAACCCAAGGGGAGAGACAATTTCAACAAGAGGTTAATGTTCTGAGCACAATAAAACATCCGAACATGGTTCAACTTCTAGGTGCCTGTCCAGAGTACGGATGCCTTGTATATGAGTACATGGAAAATGGCAGCTTAGAAGATCGCCTCTTCCAGAAGGATAACACCCCAACAATTCCATGGAAAGTTCGATTCAAAATAGCATCAGAAATTGCCTCTGGCCTTCTTTTCCTTCACCAGAGAAAGCCTGAGCCGGTTGTGCACCGTGATCTCAAGCCAGCAAACATTCTGTTGGACCGGAACTACGCGAGCAAGATCACTGATGTGGGCTTGGCCAGGCTAGTTCCCCCTAGTGTAGCCAACAAAACCACTCAATACCACAAGACAACTGCAGCTGGTACATTTTGCTACATTGACCCGGAATATCAACAAACAGGACTATTGGGTGTAAAATCAGACATATATTCATTAGGTGTAATGCTGCTACAAATTATCACCGGAAAGCCTCCTATGGGTGTGGCCCACCTCGTTCAGGATGCTGTAAGCAAAGGTAAATTCCCAGAGGTGCTTGATCCAAATGTGACTGATTGGCCCCTTGAAGAGACTTTGTCATATGCTGGGTTGGCTTTGAAGTGTTGTGAGATGAGAAAACGGGATAGACCAGACCTTGCTTCTGTCATTTTGCCAGAGCTGAATCGACTCCGAAATCTGGGAAAAGTAGTCACTGACACTGATATTGTGACAACCAAACCGGTTAGTGGCTTACTGAATTGA 2031 0.4323 MLKLGLQLDPTQIFVKPAPLSIMGSNAEEEDSTVIAIDSDRNSQHAVMWAVEHLLKKNASCTLIHVRTKALYPHDIDASPPQGRPLTEEELHQFFLPFRGFCARKGIAAKELVLHDVDVSNALTDYIIDNSISNIVVGASRWNALIRKFKDVDVPTSLVRSVPESCTVHVISKGKVHNIRPADVLAFYVYRKSKSFKYLLWLGSSNDGVSSGRNKDATQVTPRMTHGQTTSPKLSDCSSQNSSNRSSLTRDTSRLLGYQLTETSHENQDVVENSNSCTWRSKSSKRSPAMKLERFRQEEGNVEKGWFAEEATLALAEVERQQTKAVMESAEMSKRLAEMKGQKEKQIEIGAMHEEEERNRALNASAHNKILFKRYNIKEIEVATHYFDNALKIGEGGYGPVFKGVLDHTNVAIKALRPDITQGERQFQQEVNVLSTIKHPNMVQLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPTIPWKVRFKIASEIASGLLFLHQRKPEPVVHRDLKPANILLDRNYASKITDVGLARLVPPSVANKTTQYHKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKPPMGVAHLVQDAVSKGKFPEVLDPNVTDWPLEETLSYAGLALKCCEMRKRDRPDLASVILPELNRLRNLGKVVTDTDIVTTKPVSGLLN 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0333 676 ProSiteProfiles Protein kinase domain profile. 387 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0333 676 Gene3D HUPs 32 171 IPR014729 -
Ssu8g0333 676 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 228 661 - -
Ssu8g0333 676 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 32 189 - -
Ssu8g0333 676 Gene3D Phosphorylase Kinase; domain 1 364 459 - -
Ssu8g0333 676 Pfam Universal stress protein family 34 167 IPR006016 -
Ssu8g0333 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Ssu8g0333 676 Pfam Protein kinase domain 391 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0333 676 Gene3D Transferase(Phosphotransferase) domain 1 460 666 - -
Ssu8g0333 676 PANTHER OS02G0152300 PROTEIN 228 661 - -
Ssu8g0333 676 PANTHER OS02G0152300 PROTEIN 32 189 - -
Ssu8g0333 676 SMART serkin_6 387 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0333 676 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 34 149 - -
Ssu8g0333 676 MobiDBLite consensus disorder prediction 208 252 - -
Ssu8g0333 676 SUPERFAMILY Protein kinase-like (PK-like) 369 646 IPR011009 -
Ssu8g0333 676 CDD STK_N 32 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0333 Ssu-Chr8 5533885 5539633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0333 111 658 Receptor kinase-like Gene Family AT5G12000 48.929 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu8g0333 Pkinase 4.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0333 - - gmx:100814365 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3183 4 80639968 80645645 Ssu8g0333 8 5533885 5539633 PCT