Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0326 ATGGAACCTCGGGTTGGGAACAAGTTCCGTCTCGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGgTACGAATATCCAGACAAACGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTATGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCGAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAGTCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTATTCATTCCAGATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAATACAGAGACACCTCTACCCATCAACATATTCCTTACAgAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTGGAATCACTTGGATATGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTGTGTCGTGGCTACCCCACAGAGTTTGCTTCATTCTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATTTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTACGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCTACACCTCCTACTCGTGCTATTGGCCCTGCTGCTGGACCAAGTTCTGGGGTGCCACCAGCTGTTGTAAATGCTGATAGACAGAcagGTGGGGAAAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAAGTCTGGACCTATTGTAAACGATGGAATCTTGTCAAGACAAAAAGCCCCAGTTCCAAGTGACTCAACTGGATCTAAAGATGTTGTGTTATCTAGTTCTAATTTCTTCCGGTCAAGTGGATCTACAAGGCGAGGTGCTGTATCCAACAGTCGTGATGCAGTTGTTGGCAATGAGACTGAACCCTCTCATCCTCTTACCATGGATGCAAGTCCAGGAGCACTCCGTAAGGTCTCTGGTGCTCAAAGAAGTTCACCTATCATGTCATCTGAGCACAACCGAACATCCTCTGGCAGAAATACATCAAACATGAAGAATTTTGAGTCAACTCTCCGAGGTATTGAGAGCCTGAATTTCAATGACGAGAGGTTACAGTATTAG 1422 0.4248 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGIEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSRSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPTEFASFFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPTRAIGPAAGPSSGVPPAVVNADRQTGGENSRHTGWSSSDPARRRKSGPIVNDGILSRQKAPVPSDSTGSKDVVLSSSNFFRSSGSTRRGAVSNSRDAVVGNETEPSHPLTMDASPGALRKVSGAQRSSPIMSSEHNRTSSGRNTSNMKNFESTLRGIESLNFNDERLQY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0326 473 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0326 473 MobiDBLite consensus disorder prediction 364 404 - -
Ssu8g0326 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Ssu8g0326 473 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 458 IPR030509 GO:0004672|GO:0005524
Ssu8g0326 473 PANTHER CASEIN KINASE-RELATED 1 458 - -
Ssu8g0326 473 MobiDBLite consensus disorder prediction 429 456 - -
Ssu8g0326 473 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0326 473 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Ssu8g0326 473 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Ssu8g0326 473 MobiDBLite consensus disorder prediction 305 456 - -
Ssu8g0326 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Ssu8g0326 473 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0326 473 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0326 Ssu-Chr8 5422469 5427196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0326 7 223 EF-hand Containing Proteins AT2G17890 27.556 1.85e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Ssu8g0326 Pkinase 1.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0326 K02218 - gmx:100778165 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0326 8 5422469 5427196 Ssu4g3207 4 81154503 81158628 PCT