Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0325 ATGGCACGGGGGAGGATCAGGGCAAAGCTCCGCAGGAGCCATCTTTACACATTTGGTTGCCTTAGGCCAACTACCACTGAGGAGGTGCCTCATCCACTTCAAGGTCCTGGCTACTCGCGAACAGTATACTGCAACCAGCCTCTGCTCCATGAaaagaaatctttattttactgCAAGAACGATATATCAACGACCAAATACAATGTCATCACATTTTTCCCTAAGGCATTGTTTGAACAATTTCGAAGGGTTGCTAATATATACTTCCTTTTGGCTGCTTGCCTCTCGGCCTCGCCAATTTCACCTTTCAGCCCAGTGAGCATGATTGCTCCTTTGGCGTTTGTTGTGGGGCTTAGTATGGCGAAGGAAGCGTTGGAGGATTCACGCAGATTCCTTCAGGATGTCAAAGTTAATCGCCGGAAAGCTAGTCTCCATAAAGGCAATGGCGTTTTTGGTCCCAGGTCATGGCAGAAAATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAGTTTTTTCCAGCTGACTTGCTTCTCTTGGCGTCAAGTTATGACGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGGGAGACCAACTTGAAGGTGAAGCGATCTTTGGAGGCTACCTTGTCTCTGGATAATGATGGGGCTTTTAAGGATTTCTCTGGAACAGTACGTTGTGAAGATCCAAATCCCAATCTTTACACTTTTATTGGGAACTTTGAGTATGAACATCAGGTTTATCCTCTTGATCCTAGTCAAATTCTCCTCCGAGATTCAAAGCTTAGGAACACTGATCATGTCTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGcacaatagaaaaaaagatgGATTATATCATATACACTCTTTTCACTGTCCttatattgatatcttttatTAGTTCAATAGGATTTGTTTTAAAGACCAAATACCAAACCCCAAAGTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTATGATCCTGGGAAAATTGGATTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTTTATGGATATTTGATACCCATCTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTGTTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGATGAAACTGGGACTCCAGCTGAAGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTCTCTGATAAAACTGGCACGTTAACCTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTTCGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGAGCAGGACTTGGATCTCTCTAGTTTCCCCATGCGTAAGGAGAGTAAAGTGCCATGGGAAAATATCACAGAAGATGAAGAAATTGAACTGGGGACTGTTGTTACTTCCAATGAGGATGAAGATCGAAGGTCTGCCATAAAGGGATTTGGTTTTGAAGATGATCGCCTTATGAATTGTAACTGGTTGAAAGAACCCAATGCCAATGTCCTTTTGCTTTTTTTCCGGATTTTAGCAGTTTGCCATACTGCCATTCCTGAATTGAATGAGGAGACTGACACTTGTACATATGAAGCTGAATCACCTGATGAAGGGGCTTTTCTAGTAGCAGCTAGAGaatttggttttgaattttACAGGAGAACTCAATCAAGTGTTGTCATTCGTGAAAGGTTTTCTGCTTCAGGACAAGTGGTTCAAAGagaatataaaattttgaatctgCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTGATTCTGCGTGATGAGGAGGGAAGCATTATTCTTTTCTGCAAAGGAGCTGACAGTATCATATTTGATCGTCTGTCTAAGAATGGAAAAATGTATTTGGAGGCTACTACTAGGCATTTGAATGAATATGGAGAAGCTGGTTTGAGAACACTTGCCCTGGCTTACAGAAAGCTTGATGACCAAGAGTACTCTGATTGGAATGACAACTTTCAGAAGGCCAAGACAGCTGTTGGGCCTGACAGAGAGGCAATGCTTGAGCAGGTTTCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACCGCTGTGGAAGATAAATTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCTATCAACATTGGATTTGCTTGTAGTTTGCTTCGACTGGGCATGAAGCAAATCTGTATCACAATGAATTCAGATTCAGCAACTAATGATGGGAAAgagGTCATCAAAGGCAACATCTTGAATCAAATCACCAATGCCTCACAAATGGTAAAGCTGGAAAAGGATCCACATGCTGCGTTTGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGACGATGTCAAGCACGAATTTTTGGAATTGGCTGTTGGTTGTGCATCTGTTATTTGCTGTCGTGTGTCTCCAAAGCAAAAAGCATTGGTAACAAGATTGGTGAAAGAAGGAACTGGGAAGACCACTTTAGCCATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAGGGTATGCAGGTCAGTGTCCGGCTCTTTTATGGAAAATTATATCACAGAAAATTATATCTgcatattgtgtattctaacatatatttttgctaG 2799 0.4055 MARGRIRAKLRRSHLYTFGCLRPTTTEEVPHPLQGPGYSRTVYCNQPLLHEKKSLFYCKNDISTTKYNVITFFPKALFEQFRRVANIYFLLAACLSASPISPFSPVSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNRRKASLHKGNGVFGPRSWQKIMVGDVVKVEKDQFFPADLLLLASSYDDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTVRCEDPNPNLYTFIGNFEYEHQVYPLDPSQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVLKTKYQTPKWWYLRPDNIEYQYDPGKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDDETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEEQDLDLSSFPMRKESKVPWENITEDEEIELGTVVTSNEDEDRRSAIKGFGFEDDRLMNCNWLKEPNANVLLLFFRILAVCHTAIPELNEETDTCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVIRERFSASGQVVQREYKILNLLDFTSKRKRMSVILRDEEGSIILFCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEAGLRTLALAYRKLDDQEYSDWNDNFQKAKTAVGPDREAMLEQVSDIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRLGMKQICITMNSDSATNDGKEVIKGNILNQITNASQMVKLEKDPHAAFALIIDGKTLTYALEDDVKHEFLELAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQVSVRLFYGKLYHRKLYLHIVYSNIYFC 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0325 932 SFLD p-type atpase 404 908 IPR044492 -
Ssu8g0325 932 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 907 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu8g0325 932 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Ssu8g0325 932 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Ssu8g0325 932 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 907 - -
Ssu8g0325 932 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 416 IPR023298 -
Ssu8g0325 932 SFLD Haloacid Dehalogenase 404 908 - -
Ssu8g0325 932 Gene3D - 112 288 - -
Ssu8g0325 932 Gene3D - 590 697 IPR023299 GO:0000166
Ssu8g0325 932 Gene3D - 434 477 IPR023299 GO:0000166
Ssu8g0325 932 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Ssu8g0325 932 CDD P-type_ATPase_APLT_Dnf-like 60 905 - -
Ssu8g0325 932 SUPERFAMILY Calcium ATPase, transduction domain A 148 286 IPR008250 -
Ssu8g0325 932 Gene3D - 719 910 IPR023214 -
Ssu8g0325 932 Pfam Cation transport ATPase (P-type) 545 650 - -
Ssu8g0325 932 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Ssu8g0325 932 Coils Coil 448 468 - -
Ssu8g0325 932 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 522 685 IPR023299 GO:0000166
Ssu8g0325 932 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 907 - -
Ssu8g0325 932 SUPERFAMILY HAD-like 417 905 IPR036412 -
Ssu8g0325 932 Gene3D - 419 433 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0325 Ssu-Chr8 5410065 5413968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0325 1 905 Primary Pumps ATPases AT1G72700 74.286 0.0 1384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0325 K01530 - gmx:100778710 1678.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0325 8 5410065 5413968 Ssu4g3208 4 81160523 81165801 PCT