Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0323 ATGAGATGTTGGACAGTAGAACACGTTTTAAGATTTGAGAATGGGCTAGATGAAGTACAGGAGTCTTTGTTACCATGCTTTCAGCAATTTCTTATGTGGCCGCCTGATGATTGTGTCACCTTAGAGTGGGTTCAGGACATGATGGTCATCCTTGAGCAGGCTTCACAGAAGATGTTGCCATCTGAATTCTGTCATGTAGTGCCAACCATTTTGGTGGACAAATTGGCAGATGCTGCGTGcagtattttatgtaaagaatccAACTGTGTGGAGATTAATTGTCAAGAAGATTCAAGAGTCATTGTAGTAGGTGATATACATGGGCAGTTTCATGACTTAATGTTTCTTTTGAAGCATGCAGGAGTGCCCTCTGAGAACCAGATTTATGTTTTCAATGGAAATTATGTAGATAAAGGAGCATGGGGAATTGAAGTATTTTTGGTCTTGCTGGCATGGAAGGTTTTGATGCCTCACAGAGTATATCTACTTCGTGGAAATCATGAATCAAGATATTGCACTGCAAGATATGGTTTTAAGAAGGAGGTGTGGGCCAAATATGGGGATCAAGGTGAAGATGTCTACAATAAATTCCTAGAGTGTTTCAAGGAGCTTCCATTAGCTTCAGTTATTGCCAACTGTGTTTATACTACTCATGGAGGACTTTTCCGTAGTATCCATGCAGTCCCTTCACAAAAACCGAAATGGCATAAAACACATAGAGTGGATCTTGGTTCTTTAGCTGAGTTATCTGAAGTTAAAAGAGCTTGTATAGATTCCCCTTATGAAGGTCCTAACATATTATTGAGCGATGTTCTCTGGTCAAAACCATCTAACAGGTATGGTTTGAGAGATAATACAGGTCAAAAGTTAGGTTTATGGTGGGGTCCTGATTGCACTGAGGCATTCTTAAAGCAGCACAATTTAAAgCTGATTATCAGATCACATGAAGGACCTGATGCAAGGGCTGGTAGAGATGATGATTTTGGGGATATGTTGAGTGGATACAGCATGGATCATGATGTAGAATCGGGAAAACTATATACACTTTTTAGTGCTCCAGACTATCCACAGTTTGGTGAAAGGAGATATAACAATAAGGGGGCATATGCAGTATTGAAGTCGCCTGATTTTGCAAGTCCTTCCTTTCACTCATTTAAAGTGGCAGAAAGACCAATGGTGGATCCTTATGTTCATTTTGATGCTAATAACATGGACTTGAGTAAACTGGATTCTTCTCaaagtGCCTCAACCTCTGCCTTTTCTGCTCCTCAAAGATTTTATCCAGATGGGATGAGACCTGAGTTTGACTTTGGGGCATTAGGCATATATAATGCCCCATGTTGGAGTGTTGAGCTTCCTGATGGTTCAGGTGGTACTCAAGTTGTGCAGGTTCCAAGGGCTCCATTGGTGGAAGGATTGCCTCTACCTCCCAATATACAGGAGCCACACAAGGCTGCTTATGAGTATTTGTTTGAGCTAGTTGCGGCCCTGAAACATATGATTGTAACAAGGGAGACTGAGAACAGGGCCCGTGTGTCTGCTTTGCAAAGTAGAGCTAGGAAACGAAAGGGTAAGGGGTAA 1581 0.4105 MRCWTVEHVLRFENGLDEVQESLLPCFQQFLMWPPDDCVTLEWVQDMMVILEQASQKMLPSEFCHVVPTILVDKLADAACSILCKESNCVEINCQEDSRVIVVGDIHGQFHDLMFLLKHAGVPSENQIYVFNGNYVDKGAWGIEVFLVLLAWKVLMPHRVYLLRGNHESRYCTARYGFKKEVWAKYGDQGEDVYNKFLECFKELPLASVIANCVYTTHGGLFRSIHAVPSQKPKWHKTHRVDLGSLAELSEVKRACIDSPYEGPNILLSDVLWSKPSNRYGLRDNTGQKLGLWWGPDCTEAFLKQHNLKLIIRSHEGPDARAGRDDDFGDMLSGYSMDHDVESGKLYTLFSAPDYPQFGERRYNNKGAYAVLKSPDFASPSFHSFKVAERPMVDPYVHFDANNMDLSKLDSSQSASTSAFSAPQRFYPDGMRPEFDFGALGIYNAPCWSVELPDGSGGTQVVQVPRAPLVEGLPLPPNIQEPHKAAYEYLFELVAALKHMIVTRETENRARVSALQSRARKRKGKG 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0323 526 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 13 511 - -
Ssu8g0323 526 ProSitePatterns Serine/threonine specific protein phosphatases signature. 163 168 IPR006186 GO:0016787
Ssu8g0323 526 Gene3D - 36 422 IPR029052 -
Ssu8g0323 526 SUPERFAMILY Metallo-dependent phosphatases 62 395 IPR029052 -
Ssu8g0323 526 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 13 511 - -
Ssu8g0323 526 PRINTS Serine/threonine phosphatase family signature 162 186 IPR006186 GO:0016787
Ssu8g0323 526 PRINTS Serine/threonine phosphatase family signature 99 126 IPR006186 GO:0016787
Ssu8g0323 526 PRINTS Serine/threonine phosphatase family signature 345 361 IPR006186 GO:0016787
Ssu8g0323 526 PRINTS Serine/threonine phosphatase family signature 129 156 IPR006186 GO:0016787
Ssu8g0323 526 PRINTS Serine/threonine phosphatase family signature 199 225 IPR006186 GO:0016787
Ssu8g0323 526 SMART pp2a_7 67 389 IPR006186 GO:0016787
Ssu8g0323 526 Pfam Calcineurin-like phosphoesterase 99 318 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0323 Ssu-Chr8 5366385 5372120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0323 31 310 Calmodulin-binding Proteins AT5G63870 52.234 6.11e-99 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0323 K04460 - gmx:100779241 962.214