Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0321 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTTAAAAGAGGGCTATGGTCAcctgaagaagatgaaaagctCATGAACTACATCACAACTTATGGACACGGTTGCTGGAGCTCAGTCCCAAAACTCGCAGGCCTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGGGGAAGCTTCTCTCCTCAAGAAGCAGCACTCATTATAGAACTTCATAGTATTCTAGGcaacagGTGGGCTCAGATAGCCAAGCACCTACCTGGACGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAGCTGCTTTCTCATGATGTTGTTCCTTCTTTAGCCACATTTTCTGATATTCACGGTCCTGCCAATGGCTCCATGGAAAGCTTCTTCCCTTTAACTGACAACCCTATCCTAAACTCCCATCATCACTTAGACGGCCAGCTATACCTTCCCATCATCCCACCCCCAATCCTGCAAGGGTTTGAtcatcacaatgatatcaagatTGACATAAACGATTATAATAATGCCAACTCCCTACATTTTCAGAATCCAATGCCAGAAACAGTGCCACCATCCAATAATATTCCATCTTTGTATGAAGACACATGGTCGTTGGGGTGTGTACCTATTCATCTTAATGCAAATCAGGAAAATCAAATAATGATCACCAAAAGTGATACCACCCCACAATTTGTTGTTGAGAAATTCATCAATCCAAGTACATGGCAGCACTTGGTGGAACCCAATGTGCCAAGAGTCTGTGAGAGCATTGAGGATTATGTCTGTAACATCCCATATTCTTCTTCTGCTAATTCACAAGAACATGAGGAGGCTGTTGCGTGTTACACACCTGGCATTTGTCCACAAGATCAAACTGCGGCACCCAATCAAGTGGAGTACATTGATGCCCTCATCATGTCATCATTGCCATCCTCAACAACATCATCTTCATCAGTATCATTCTATCAAGCAGACAAATAG 1023 0.4106 MGHHSCCNKQKVKRGLWSPEEDEKLMNYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVPSLATFSDIHGPANGSMESFFPLTDNPILNSHHHLDGQLYLPIIPPPILQGFDHHNDIKIDINDYNNANSLHFQNPMPETVPPSNNIPSLYEDTWSLGCVPIHLNANQENQIMITKSDTTPQFVVEKFINPSTWQHLVEPNVPRVCESIEDYVCNIPYSSSANSQEHEEAVACYTPGICPQDQTAAPNQVEYIDALIMSSLPSSTTSSSSVSFYQADK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0321 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu8g0321 340 PANTHER MYB DOMAIN PROTEIN 55 2 332 - -
Ssu8g0321 340 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu8g0321 340 CDD SANT 17 61 IPR001005 -
Ssu8g0321 340 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu8g0321 340 Gene3D - 11 67 - -
Ssu8g0321 340 Gene3D - 69 116 - -
Ssu8g0321 340 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu8g0321 340 PANTHER TRANSCRIPTION FACTOR MYB26 2 332 - -
Ssu8g0321 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu8g0321 340 CDD SANT 69 109 IPR001005 -
Ssu8g0321 340 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu8g0321 340 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Ssu8g0321 340 SMART sant 66 114 IPR001005 -
Ssu8g0321 340 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0321 Ssu-Chr8 5350537 5351861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0321 1 118 MYB Transcription Factor Family AT3G13890 95.763 9.05e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g0321 Myb_DNA-binding 3.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0321 K09422 - gmx:102662609 580.867