Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0320 ATGGGTGCTTCGGGAAGGTGGTTTAAGTCATTTCTTCCTTTTCGAAAGACCTCAACTTCAACAACTGATCAAGAGAAGGGTGGTGAAAACAAGAGTAAGAAGAAGTGGAAGCTATGGAGGGCTTTTTCAGAAGGGTCCATGAAGAAAGTTGGTGCTGCTGCTGCATCTGATTCTTCCCTTACTCATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGGTCATCAAGCAGGAATGGGCTGCCATCCGCATTCAGGCTGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAGGGCAGTGGTAAGGCTACAAGCTATTTTTCGAGGCCGGCTGGTCCGAAAGCAAGCAGTTGTTACTCTGAGGTGCATGCAGGCTCTTGTCCGAGTTCAGGCACGGGTGAGGGCAAGAAATGTGAGGAATTCTCCTGAAGGGAAAGCAGTGCAGAAATTACTAGATGAGCATCGCAACCAAGCTGATCCTGTTAAGCAGATTGAGCAAGGATGGTGTGACATTCCTGGAACTGTGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCGTACTCTCTCTCCACACAGTCAAGACTAGGTGCTAGTCCAAACCCCAAAGCCACTAAGGCATTGACTCCTCTCAAGCATCACAACCTAAGCAATAAGAGCTTAGGATGTAGCTTGTTAGAGCGCTGGATGGAGGCCAAGCCATGGGAGAGTCCAGTCTCCGGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTGTGACAACTAGGATTTCAGTTAAACCTCCTACAACCAGTCTATCGACTCCATCATCTTCGGCCATAAGCTCTGAATACGTGTGTGATGATAGCCCTGTGTCAACATCTTATACATCTGGATCTCCATCTTTGCCATCCGCCAATACTGTTTTGGTGGAAGCAACAGAGGAAAGAGATGTTCATCAACCAAGCTACATGAATTTGACAGAATCAACTAAGGCTAAACTGAAAACTTGCAGGAGTTCTTCACAGAATTTAAAGAGACTTGTAATGGAGAATTGTGTGTCACACAGCACAACAACAGGCTTTATGAATGGAGATACTAGAAGCTGTTTTGATTCTGATCCTTCAGTTAACTTGTGGAAGGATTCTTGTGCAACACCTCTAAGGGCAAGTTATCAAAAACGACAAATTAGGATATGA 1230 0.4585 MGASGRWFKSFLPFRKTSTSTTDQEKGGENKSKKKWKLWRAFSEGSMKKVGAAAASDSSLTHAVAVMVPKDFKVIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAVVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLDEHRNQADPVKQIEQGWCDIPGTVDEVKAKLRMRQEGAIKRDRAMAYSLSTQSRLGASPNPKATKALTPLKHHNLSNKSLGCSLLERWMEAKPWESPVSGKSEDLVPAFQSRRNGVTTRISVKPPTTSLSTPSSSAISSEYVCDDSPVSTSYTSGSPSLPSANTVLVEATEERDVHQPSYMNLTESTKAKLKTCRSSSQNLKRLVMENCVSHSTTTGFMNGDTRSCFDSDPSVNLWKDSCATPLRASYQKRQIRI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0320 409 Pfam IQ calmodulin-binding motif 101 118 IPR000048 GO:0005515
Ssu8g0320 409 Pfam IQ calmodulin-binding motif 79 98 IPR000048 GO:0005515
Ssu8g0320 409 ProSiteProfiles IQ motif profile. 101 128 IPR000048 GO:0005515
Ssu8g0320 409 PANTHER IQ-DOMAIN 5-RELATED 1 405 - -
Ssu8g0320 409 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 405 - -
Ssu8g0320 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 120 IPR027417 -
Ssu8g0320 409 Gene3D - 75 128 - -
Ssu8g0320 409 SMART iq_5 99 120 IPR000048 GO:0005515
Ssu8g0320 409 SMART iq_5 76 98 IPR000048 GO:0005515
Ssu8g0320 409 ProSiteProfiles IQ motif profile. 77 105 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0320 Ssu-Chr8 5332268 5334306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0320 1 389 IQD Protein Family AT2G26180 44.844 1.98e-89 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0320 - - gmx:100788715 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0320 8 5332268 5334306 Ssu4g3220 4 81506836 81509161 PCT