Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0316 ATGGATTATTATCTTTCTCAGCACTCGCAATTGGAATCTGAGGTTGGCGCCTACAACGATGATGCCTATGATGAGCATGTAAAGCCCTCCTTCAATCGTCGCGATTCCTCTTCAGGGAAACTCTTCGTTGGAGGCATTTCTTGGGAGActtctcaagagtcattttttaattacttcagCAAATATGGAGAAGTAACAGATTCCGTGATAATGACGAATAAACTTTCTGGAAGGCCACGGGGGTTTGGCTTTGTAACATTTGCCGATGCAGCTGTTGCAGATGAAGTTTTGGCACAGGAACATACCATTGATGGCAGAGTGgTTGAAGTGAAGAGAACAGTCCCTAGGGAGGATATGGATGTTATTGGagtattaaaaacaaagaagatATTTGTTGGGGGAATACCCCAGTTTTTCACTGATGATGAGTTGAGGGAATACTTTTCACCTTATGGTGATGTTATTGAGTGCCAAATCATGCTAGATTACAAGACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGACAATGAAGATTCAGTTGATAAGGTTTTTTCAGTGGGTAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCTAAAAGATCTGGAGTTGATTACAGCAGCACCTCACGAAAGTCATATGGTGGTGTTGGCAATGGAATGGATGGATATGGCGGTAATAGTTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGATTCTGGAACGAACGGAGCATATAGCCATTTTGAGGGGAGCTTTGGTGGAAGTGCTGCCACTGTTTATGGTGGCTATTGTGGATATGGTTATGGATTTGGATATGGTGGACCAATGTACTGCTATGGCAGTTATGGACTCAATTCTTATGGTAATCCTGGGGGTTATGGTGGCATTACTTCCTATGGAGATGGTAATGCATATGGAAGAACTGGTAGTTTCAATCGCACTGGTGGCTATGACACTGGCAAAGTGGCTGAGAAGGATGATGGTCCTATGAATGGAAGGTACCATCCGTACTGGAAGTGA 1056 0.4138 MDYYLSQHSQLESEVGAYNDDAYDEHVKPSFNRRDSSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADAAVADEVLAQEHTIDGRVVEVKRTVPREDMDVIGVLKTKKIFVGGIPQFFTDDELREYFSPYGDVIECQIMLDYKTGRSRGFGFVTFDNEDSVDKVFSVGKIHEIGGKQVEIKRAEPKRSGVDYSSTSRKSYGGVGNGMDGYGGNSSRNRNHGKRGGQYTDSGTNGAYSHFEGSFGGSAATVYGGYCGYGYGFGYGGPMYCYGSYGLNSYGNPGGYGGITSYGDGNAYGRTGSFNRTGGYDTGKVAEKDDGPMNGRYHPYWK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0316 351 Gene3D - 37 120 IPR012677 -
Ssu8g0316 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 206 IPR000504 GO:0003723
Ssu8g0316 351 SUPERFAMILY RNA-binding domain, RBD 31 119 IPR035979 GO:0003676
Ssu8g0316 351 SMART rrm1_1 40 111 IPR000504 GO:0003723
Ssu8g0316 351 SMART rrm1_1 129 202 IPR000504 GO:0003723
Ssu8g0316 351 SUPERFAMILY RNA-binding domain, RBD 126 234 IPR035979 GO:0003676
Ssu8g0316 351 Gene3D - 124 262 IPR012677 -
Ssu8g0316 351 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 34 349 - -
Ssu8g0316 351 MobiDBLite consensus disorder prediction 205 250 - -
Ssu8g0316 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 115 IPR000504 GO:0003723
Ssu8g0316 351 MobiDBLite consensus disorder prediction 231 250 - -
Ssu8g0316 351 PANTHER BOULE-RELATED 34 349 IPR037366 GO:0003729
Ssu8g0316 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 198 IPR000504 GO:0003723
Ssu8g0316 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0316 Ssu-Chr8 5303119 5307526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0316 24 203 Eukaryotic Initiation Factors Gene Family AT1G71770 25.123 1.28e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0316 K12741 - gmx:100818080 569.311