Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0313 aTGGTTTGGTTGAAGCTATTATTCATTCCCCCATCTTTTCTTTACTCTTTGAGTGGCATATTTATACTTCGAGGAAGACCAACAGTGATGTTTACTTGTGTTGAAGGAGTACAGTTGATAGATCGATCTAAAGAGAGAAACTTCTGCTATTGTTGCTATCCAATGGAAGCTTCATCTTCTTCCCACGTTCCTCGAATCAAATATGATGTCTTCATTAGCTTTAGAGGCACAGACGTACGGTTTGGTTTTCTTAGCCATTTGAAGAAGGGACTGCGTCAGAAGCAAGTTGATGCTTTTGTGGACGACAGACTTGAAGGAGGGGATGAGATATCACTCTCACTTGTCAAAGCCATTGAAGGATCACATATTTCTTTGGTCATATTCTCCAAAGACTATGCTTCTTCAAAGTGGTGCTTGGAAGAGCTTGTGAAGATCATTGAGTGCATGGACAGAAATAAACAGATTGTGATTCCTGTTTTCTACAACGTAGATCCATCGCACGTACGGCACCAAAAAGGGACTTATGGAGATGCACTAGCTAaacatgaaagaaataaaagaaacctAGCCAAGGTGCCAAATTGGAGATATGCTCTAAATATAGCTGCTAATCTTTCTGGATTTCATTCGTTAAAATTTGGGGATGAAGTTGAGCTTATAGAAGAAATTGCGAAATATTTGTCGTCCAAGTTGAATCTTATGTACCAAAGTGAGCTGACAGAGCTTGTCGGAATTGAAGAACGGATTGCAGATTTGGAGTCACTATTGTGCCTAGGATCGACAATAGATGTTCGTGTGATCGGGATTTGGGGCATGGGTGGTATTGGAAAGACAACTATTGCAGCTGCAGTTTATAATCGCCTTTGTTGTGAATATGAAGGGTGTTGCTTTATGGCAAACATTACAGAACAATCAGAGAAACATGGAATGATTTATCTGAAGAATAAAATCATCTCTATATTACTGAAGGAAAATGATCTACATATTGGCACACCTAATGGAGTTCCCCCATATGTTAAAAGAAGGTTGGTTCGTAAAAAGGTTCTCGTTGTTCTTGACGATATCAATGATTCAGAACAGCTAGAAAATTTAGTTGGAGCACTTGATTGGTTTGGATCTGGTAGCAGAATCATTGTAACAACTAGAGATAAGGGTGTGCTAGGAAAAAGGGTTGACCTTATATATGAGGCTAAGGCATTAAACTCTGATGAagctattaaaattttcatgttgAATGCCTTCAAACAAAGTTGTCTTGACTTGGAGTGGATTGAGCTATCTAGAAGGGTGATTCAGTATGCTAATGGAAACCCATTAGCCTTAAAAGTGTTGGGTTCTTTTCTTTATGGTAAGAGCAAAATAGAATGGGAAAGCCAATTACAGAAACTCAAGAAAATGCCTCATGCAAAAATTCAGAATGTATTGAGATTGACTTATGATAGACTTGATCGAGAAGAGAAGaacatatttctatatattgCGTGTTTTTTGAAAGGATATGAAATACGCAGGATAATATATCTGCTTGATGCTTGTGGTCTCTCAACAATTATTGGGTTAAAAGTCCTTAAAGACAAGGCCCTCATAATTGAAGCCAAGGGTTCTGGAATGTCAATTGTATCGATGCATGACTTGATACAAGAAATGGGTTGGGAGATTGTTCGAGAAGAATGCATTGAAGACCCTGGAAAACGAACTAGATTATGGGATCCTAATGACATTCATCTAGTCTTGAAAAATAACACGGGAACTAAAGCCATCAAAAGCATAAACTTCAACGTCTCAAAATTTGATGAGGTGTGCTTAAGTCCTCAAGTCTTTGCAAAGATGCAACAGttaaaatttctcaattttacCCAACATTATGGCGATGAGCAAATCCTGTATCTTCCCAAGGGCCTCGAGTCTTTGCCTAATGACCTAAGACTTTTTCATTGGGTTAGTTATCCTTTGAAATTCTTGCCTCAATCATTTCGTGCAGAAAATCTCGTTGAGCTCAAAATGACTTGGAGCCGCGTGGAAAAACTCTGGGGTGGGACCCAGAATCTTGaacatttaaagaaaattgacCTCAGTAATTCCAAATATCTGCTAGAGCTCCCAGATTTTTCAAAGGCCTCAAATCTTGAAGAGGTGGAACTCTATGGTTGCAAAAACTTGCGTAATGTTCATCCCTCTATTTTATCTCTCAACAAGCTTGTACGGTTGAACCTATTTTACTGCAAAGCGCTTACTAGTCTCACAAGTGATTCCCATTTAAGATCTCTACGTGACCTCTTCCTGGGTGGTTGCTCAAGACTAAAGGAGTTTTCAGTGACTTCAGAGAACATGAAAGACTTAAATTTAACTTCAACGGCTATCAATGGGTTGCCCTCATCAATTGGGACTCTCAGAAAACTTGAAACACTGACTCTTAATCTCTGCAAAAGTCTAAACAATCTTCCAAACAAGGTTGCTAATCTAGGATCACTTCGGTCTCTTGATATTTATGGCTGCACACAACTTGATGCATCAAATCTGCATATCCTAGTCAATGGTTTAAGGTCTTTGGAAACATTGAAGTTGGAAGAATGCCGTAACTTATTTGAAATTCCTGATAACATCAGCCTCCTATCATCATTGCGGCAGTTGTTGCTAAAAGGTACAGATATTGAGAGAGTTCCTGCAAGCATCAAGCATCTTTCAAAGCTGGAAAAGCTTGACTTAAGTGGTTGCAGAAGGCTTTATTCTCTGCCAGAGCTTCCACTGTCCATAAAAGAGTTATCTGCCACTAACTGTTCATCCTTGGAGACTGTAATGTTCACTTTGAGTGCTGTTGAAATACTACAAGCGTACAAGATGCACACAAAATTCCAAAATTGTGTTAAGTTGGATGAACCTTCACTAAGTGCTATTGGAGTAAATGCTCATGTGAACATAAAGAAAGTGGCATATGATCATCTCTCAACAATAGGAACCAAGTTTCTTGATGCTCCAGTTGATGTTATCTACCCTGGAATTGAGGTTCCAGATTGGTTCATGTATAGGAGTACACAGGCTTCAGTAACTATTGATCTCTCTTCTGCCCCACGATCCAAGATGATGGGTTTCATCTTTTGTGTTATTGTTGATAAGTTCCCTTCAAACGACAAGAACTTTATTGGATGTGACTGTTACATGGAAACTGGTATTGGTGAAGGGGTCACACGTGGGCACATGGATACATGGTCTAGTATACATGCATGTGAATTTTTCTCCGACCATGTGTGTCTGTGGTATGATGAAAAATGCTGTCTGCAAAACCGTGAATGTGAAAGTGAAAGCATGGAAGAACTTGTGACCAGTTATAATCCAAAGATTACATTTGAATTCTTTGCTCAAACTGGAAGTATTTGGGAAAAGCGGAAGGATATTATGATTAGGGGGTGTGGAGTGTGTCCAATATACGACACAGAATATGACAATTTCATTGAACAGATGGAACTGGAGTTGGAATTGACATTGCAATCTATAGCAACTAAAATGTCAGGTGCAAGCTCTAGTAAGGAAGAAACACTCGCTCCAAAACTGCAGTGCAAGAAACTAAGCTTTCCACCCCATCAAATTGGAACTTGGAAGAGTGCAACACAGGGCTTGAAAGATATACTGTTCCTATGA 3636 0.3842 MVWLKLLFIPPSFLYSLSGIFILRGRPTVMFTCVEGVQLIDRSKERNFCYCCYPMEASSSSHVPRIKYDVFISFRGTDVRFGFLSHLKKGLRQKQVDAFVDDRLEGGDEISLSLVKAIEGSHISLVIFSKDYASSKWCLEELVKIIECMDRNKQIVIPVFYNVDPSHVRHQKGTYGDALAKHERNKRNLAKVPNWRYALNIAANLSGFHSLKFGDEVELIEEIAKYLSSKLNLMYQSELTELVGIEERIADLESLLCLGSTIDVRVIGIWGMGGIGKTTIAAAVYNRLCCEYEGCCFMANITEQSEKHGMIYLKNKIISILLKENDLHIGTPNGVPPYVKRRLVRKKVLVVLDDINDSEQLENLVGALDWFGSGSRIIVTTRDKGVLGKRVDLIYEAKALNSDEAIKIFMLNAFKQSCLDLEWIELSRRVIQYANGNPLALKVLGSFLYGKSKIEWESQLQKLKKMPHAKIQNVLRLTYDRLDREEKNIFLYIACFLKGYEIRRIIYLLDACGLSTIIGLKVLKDKALIIEAKGSGMSIVSMHDLIQEMGWEIVREECIEDPGKRTRLWDPNDIHLVLKNNTGTKAIKSINFNVSKFDEVCLSPQVFAKMQQLKFLNFTQHYGDEQILYLPKGLESLPNDLRLFHWVSYPLKFLPQSFRAENLVELKMTWSRVEKLWGGTQNLEHLKKIDLSNSKYLLELPDFSKASNLEEVELYGCKNLRNVHPSILSLNKLVRLNLFYCKALTSLTSDSHLRSLRDLFLGGCSRLKEFSVTSENMKDLNLTSTAINGLPSSIGTLRKLETLTLNLCKSLNNLPNKVANLGSLRSLDIYGCTQLDASNLHILVNGLRSLETLKLEECRNLFEIPDNISLLSSLRQLLLKGTDIERVPASIKHLSKLEKLDLSGCRRLYSLPELPLSIKELSATNCSSLETVMFTLSAVEILQAYKMHTKFQNCVKLDEPSLSAIGVNAHVNIKKVAYDHLSTIGTKFLDAPVDVIYPGIEVPDWFMYRSTQASVTIDLSSAPRSKMMGFIFCVIVDKFPSNDKNFIGCDCYMETGIGEGVTRGHMDTWSSIHACEFFSDHVCLWYDEKCCLQNRECESESMEELVTSYNPKITFEFFAQTGSIWEKRKDIMIRGCGVCPIYDTEYDNFIEQMELELELTLQSIATKMSGASSSKEETLAPKLQCKKLSFPPHQIGTWKSATQGLKDILFL 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0313 1211 Pfam TIR domain 67 244 IPR000157 GO:0007165
Ssu8g0313 1211 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 63 832 - -
Ssu8g0313 1211 Gene3D Ribonuclease Inhibitor 567 775 IPR032675 -
Ssu8g0313 1211 Gene3D Ribonuclease Inhibitor 776 963 IPR032675 -
Ssu8g0313 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 493 IPR027417 -
Ssu8g0313 1211 Gene3D - 65 233 IPR035897 -
Ssu8g0313 1211 Pfam NB-ARC domain 259 471 IPR002182 GO:0043531
Ssu8g0313 1211 SUPERFAMILY L domain-like 542 937 - -
Ssu8g0313 1211 SUPERFAMILY Toll/Interleukin receptor TIR domain 58 208 IPR035897 -
Ssu8g0313 1211 SMART till_3 67 205 IPR000157 GO:0007165
Ssu8g0313 1211 Gene3D - 234 393 IPR027417 -
Ssu8g0313 1211 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 63 832 IPR044974 GO:0006952
Ssu8g0313 1211 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 808 1159 IPR044974 GO:0006952
Ssu8g0313 1211 Pfam C-JID domain 998 1145 IPR045344 -
Ssu8g0313 1211 Gene3D - 399 483 IPR042197 -
Ssu8g0313 1211 PRINTS Disease resistance protein signature 342 356 - -
Ssu8g0313 1211 PRINTS Disease resistance protein signature 266 281 - -
Ssu8g0313 1211 PRINTS Disease resistance protein signature 892 908 - -
Ssu8g0313 1211 PRINTS Disease resistance protein signature 434 448 - -
Ssu8g0313 1211 ProSiteProfiles TIR domain profile. 66 231 IPR000157 GO:0007165
Ssu8g0313 1211 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 808 1159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0313 Ssu-Chr8 5279353 5283582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0313 53 907 WRKY Transcription Factor Family AT4G12020 33.026 1.96e-115 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0313 - - ccaj:109805840 2065.43