Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0310 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCCAGTGCTTCTTCAGGCAACAGAACCGAAATTGGCACTGATTACTCTCAACAATACTTTGCTCCACCACCGACTCAAACCCAGCCTCCactaaagaaaaagagaaaccTTCCTGGCAACCCAGaCCCGGAAGCTGAAGTTGTCGCGTTGTCTCCAAAGAGTCTCTTGGCCACAAATAGGTTCGTTTGTGAGATCTGTAACAAGGGGTTTCAAAGAGACCAGAATCTCCAACTTCACCGAAGAGGGCACAATTTACCGTGGAAGCTGAAGCAGAGAACCGGCAAAGAGATAAGGAAGAAGGTGTATGTGTGCCCAGAACCTACTTGCGTGCACCACGACCCATCAAGGGCCCTGGGGGACCTAACCGGTATCAAGAAGCACTTCTGCAGAAAACACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGCGATGCATTAGCAGAGGAGAGTGCAAGAGGCATAGGCATAGGCAACAACCCACTTCTCCCCTCAAGTCAACCACTAGTGATCTCTCATCATCAAGACATCCATGGTAATAATTTCCCATTGAAGAAAGAGCAACAAGGTTTCATACCCCCTTGGCTTGGAGCACAGCCCACCGTGGATCTTTCtccctcatcatcatcattcttCCCTCCTCCAAGTCTCCGTGAAAACCCTAACCCTAGAGGCGGTCCCACAGCGACTCTTCCTCCCTACCAAACAGCGCCTTTCCCTCCTCACATGTCAGCCACAGCGCTGCTGCAGAAAGCAGCCCAAATGGGTGCAACGATGAGCAAAACCGGCTCCATGATTAGGACCCACCAACAGGCTCACGTGTCTGCTGACTCTGCCAATGCTGCTTTCAATCTGTCCTCACGTGAAGACCAGATGACCCCCACTGCCAATGCCACTCCCCATGGCTCGGTACCTTTCGGGAATAAAGCTGTTGCTGGTGTTGGTGTCGGGACTTCTTTTGAGGACACTTTTGGCGGCCACGGTGATGCCATCACGAAAACAACCACCGCTGGTGACGGTGGCGCCGgcggaaataataataataataacgaagGCTTGACCAGAGATTTCTTGGGTCTTAGACCCCTCTCTCACACTGATATCCTCAACTTTGCTGGCATGGGAAACTGCATCAACTCCTCCCAACATAACCAAACCCAAAACCCTTGGCAAGATTGCCAATCTTCCCAAAGGGAAGGACCTTTCAGAATCccaatattttctttccttatatATGTGtag 1395 0.4781 MSNLTSASGEASASSGNRTEIGTDYSQQYFAPPPTQTQPPLKKKRNLPGNPDPEAEVVALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTGKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARGIGIGNNPLLPSSQPLVISHHQDIHGNNFPLKKEQQGFIPPWLGAQPTVDLSPSSSSFFPPPSLRENPNPRGGPTATLPPYQTAPFPPHMSATALLQKAAQMGATMSKTGSMIRTHQQAHVSADSANAAFNLSSREDQMTPTANATPHGSVPFGNKAVAGVGVGTSFEDTFGGHGDAITKTTTAGDGGAGGNNNNNNEGLTRDFLGLRPLSHTDILNFAGMGNCINSSQHNQTQNPWQDCQSSQREGPFRIPIFSFLIYV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0310 464 Gene3D Classic Zinc Finger 125 204 - -
Ssu8g0310 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Ssu8g0310 464 SMART c2h2final6 71 93 IPR013087 -
Ssu8g0310 464 SMART c2h2final6 147 167 IPR013087 -
Ssu8g0310 464 SMART c2h2final6 112 142 IPR013087 -
Ssu8g0310 464 Gene3D Classic Zinc Finger 71 115 - -
Ssu8g0310 464 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 427 - -
Ssu8g0310 464 MobiDBLite consensus disorder prediction 1 32 - -
Ssu8g0310 464 MobiDBLite consensus disorder prediction 1 54 - -
Ssu8g0310 464 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Ssu8g0310 464 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Ssu8g0310 464 MobiDBLite consensus disorder prediction 254 282 - -
Ssu8g0310 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0310 Ssu-Chr8 5209605 5211835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0310 1 442 IDZ Gene Family AT3G13810 50.388 2.45e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0310 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0310 K25870 - gmx:100820609 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0310 8 5209605 5211835 Ssu4g3232 4 81661620 81663760 PCT