Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0308 ATGGATAACAGCATGTCAAGGAGCACCGCACAGGCTTGCGCTGCTTGTAAGTACCAACGCAGGAAGTGCGGGTCCAACTGCATTCTCGCACCTTATTTTCCTCATGATCGCCAAAAACAATTTCTTAATGCCCATAGATTATTCGGGGTAGGCAAAATCACCAACATGATTAAGCCCCTTGATCCCCAGGAGAGAGACATAGCCATGAGTACCATTATCTATCAATCTGACATGCGTGACAGAGATCCTACTGGGGGTTGTTACAGGCTCATACAACAATTGCAATCTCAGATAGAATACACCAATGCAGAGCTTCACCTTGTCCTTCAGCATCTAGCTTTCTTCAGAGCACAAGCAAATTCCTGTGACATCGTCAATGCCACGCCTCAGCCTTACCTTGAACAAACGCCATtggaacaacaacaacaacaacaatgcatAAATTACAACCATTTACAAGAAGACATCAGCATGTGGGCCGTTCAGAACTCTATACCTCTGTCATCCTTGTTGCAGGGAGACATCACCCAAGATCCTATTGCTGATTATGGATATGATCAAAAGCCTGTTCTTGACCTGATGAATAAATGA 591 0.4264 MDNSMSRSTAQACAACKYQRRKCGSNCILAPYFPHDRQKQFLNAHRLFGVGKITNMIKPLDPQERDIAMSTIIYQSDMRDRDPTGGCYRLIQQLQSQIEYTNAELHLVLQHLAFFRAQANSCDIVNATPQPYLEQTPLEQQQQQQCINYNHLQEDISMWAVQNSIPLSSLLQGDITQDPIADYGYDQKPVLDLMNK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0308 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 192 - -
Ssu8g0308 196 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Ssu8g0308 196 PANTHER LOB DOMAIN PROTEIN 7 192 - -
Ssu8g0308 196 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0308 Ssu-Chr8 5167398 5167988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0308 11 193 AS2 family AT3G13850 46.698 1.35e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu8g0308 LOB 7.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0308 - - ccaj:114916407 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0308 8 5167398 5167988 Ssu4g3235 4 81690933 81692598 PCT