Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0307 ATGGCAACCAACGAGCTAGAATCAGAAGTAGCCAAAAGGGTCCAATACCCACTGGACTCTTGCTCCTACAAGCTACTCAACGAGATCGGCGCCGGCGTGAGCGCCGTCGTGTACAAAGCCCTCTGCATCCCCATGAACTCCGCCGCCGTCGCAATCAAATCCATCGACCTGGACCGTTCCCGCCCGGACTTGGACGACGTGCGGCGCGAGGCCAAGACGCTTTCCCTCCTTTCTCACCCCAACATCCTCAGAGCCCACTGTTCGTTCACCGTCGACCGCCGCCTCTGGGTGGTGATGCCCTTCATGGCCGCCGGATCACTGCAGTCCATCATCTCCCATTCCTTCCCGAACGGCCTAAGCGAGCCCTGCATCGCCGTCGTTCTCAAAGACACCCTCGGCGCCCTCTCTTACCTCCACGGCCAGGGCCATCTCCACAGAGACGTAAAAGCCGGGAACATCCTCGTCGACTCCGACGGACACGTGAAGCTGGCGGACTTCGGCGTCTCCGCCTCGATCTACGAGTCCACGTGTTCGTCTCTCAAGTTCACTGACGTGGCTGGCACGCCGTATTGGATGGCACCCGAGGTGATCCACTCACACAACGGGTACAGTTTCAAGGCTGACATATGGTCCTTTGGGATAACCGCTCTGGAGCTCGCGCATGGAAGGCCTCCGCTCTCTCACCTTCCTCCTTGCAAGTCCATGATGCTCAAGATCACCAAGCGCTTCAGGTTTTCGGATTTTGACAAGTATAGGAAGGGGAACGGGAAGAAGTTCTCTAAGGCCTTCAAGGACATGGTGGCTTCTTGCCTCGACCAAGACCCTTCCAAGAGACCAACTGCTGATAAGTTGCTCAAGCACGCCTTCTTTAAAAACTGTAAGGGGTCTGATTTTTTGGTGAAGAATGTGCTGCATGGGTTGCCCAGTGTGGAGAAAAGGTATAAGGAGAGCAAGGTTAGTCATGTGCatggagatgatgatgatgatgatgatgctgATGACCCCGCCATGCATGGGAAACAAAGAAGGATTAGTGGGTGGAACTTCAATCAAGACGGGTTGGAGCTTGACCCTGTGTTCCCGAACGATGATGCCGCTGCGGTTAAAGAGGTTCGGTTTGGAGGGGAAACGGTTATCCAACAGATGGGGGAGGAAAAGGCGGGGCCTGTTGTGAACATTCCTAACAGGGAGGGCATGTTGGCGACTCTGAATGTGTTGAAAGGGAGCTTGGAACAAGAGCTGTGGCAAGTGAAGTTTCTCGTGAATACGATACAAGGAGACCAGGAGACTCATCAAGTGGTTGATGCCGACGAGCAGGAGATTTCTAGGTTGAGGGCTGAATTGGAAAATGAGAGGAAGAAGAACTTGCACTTGGAGTTGCAACTCGAGACCTGCAAGCTCCAACTTTCTTCTGGTCTTAATTGTTCAAAGTAA 1434 0.5293 MATNELESEVAKRVQYPLDSCSYKLLNEIGAGVSAVVYKALCIPMNSAAVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILRAHCSFTVDRRLWVVMPFMAAGSLQSIISHSFPNGLSEPCIAVVLKDTLGALSYLHGQGHLHRDVKAGNILVDSDGHVKLADFGVSASIYESTCSSLKFTDVAGTPYWMAPEVIHSHNGYSFKADIWSFGITALELAHGRPPLSHLPPCKSMMLKITKRFRFSDFDKYRKGNGKKFSKAFKDMVASCLDQDPSKRPTADKLLKHAFFKNCKGSDFLVKNVLHGLPSVEKRYKESKVSHVHGDDDDDDDADDPAMHGKQRRISGWNFNQDGLELDPVFPNDDAAAVKEVRFGGETVIQQMGEEKAGPVVNIPNREGMLATLNVLKGSLEQELWQVKFLVNTIQGDQETHQVVDADEQEISRLRAELENERKKNLHLELQLETCKLQLSSGLNCSK 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0307 477 SMART serkin_6 23 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0307 477 ProSiteProfiles Protein kinase domain profile. 23 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0307 477 SUPERFAMILY Protein kinase-like (PK-like) 22 305 IPR011009 -
Ssu8g0307 477 Gene3D Phosphorylase Kinase; domain 1 11 101 - -
Ssu8g0307 477 ProSitePatterns Protein kinases ATP-binding region signature. 29 53 IPR017441 GO:0005524
Ssu8g0307 477 MobiDBLite consensus disorder prediction 315 342 - -
Ssu8g0307 477 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 8 468 - -
Ssu8g0307 477 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 8 468 - -
Ssu8g0307 477 Coils Coil 434 468 - -
Ssu8g0307 477 Pfam Protein kinase domain 23 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0307 477 Gene3D Transferase(Phosphotransferase) domain 1 105 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0307 Ssu-Chr8 5159894 5161327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0307 1 456 MAP Kinase Kinase Kinase Kinase AT4G14480 56.352 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Ssu8g0307 Pkinase 3.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0307 K08835 - gmx:100820227 760.755