Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0303 ATGGGATTGCAGCTTATTTTCCTGCTAATTAAGCTACATTTTGCTGTTTGTACACCCCAGGTCCATGAATATGCTGccACCTATCTGCACCATTCGAGAATCAGAAGCCCTTCAAGTATTGCATTCCCACCATCACAGTCACCTTCTGGAGTTCCTGCTAGTATTGCACTTCCACCTTCCAAGTCATCTTCTAGAGTTCCCGGAAGTATAGCACTTTCACCTTCCAAATCATTcttcaaaattcctaaaatgaaATGGACGCACAGTTCTGTGGACTCTCCGATATCACACCGTAAGCATCACTATTCCAGAAGAAAGTCCAGCAACTACCCTCATACTCTTCAAGGTCCTCCAGTCTTCAAATCACAACATCCATTGTCTTCACCTATGAGCTGGGATTTTCATGCACCCGCACCAGCACCTGCACCATCAACCGCAGTTCTATCACACCGCTTGAATGTGCCCTCTCCTTCACCTAGCATTTCACCTCTAGGTTCATCATTGAAGAAGACAAAGACTCCTCCACCAGCATATGCTTTGATTCTACCATCTCCACCACCTAATAAAGATTGCATGTCGGTGACTTGCTCTGAGCCCTTGACATATACACCTCCTGGATCACCTTGTGGTTGTGTATGGCCTCTTCAAGTTAAACTCCGCATCAGCATTGCAATATACaagttttttcctttgttttccgAGCTGGCCGAAGAAATTGCAGCCAGTGTTTTGCTGAACCGTAATCAAGTACGCATTGTGGGAGCTGATGCAACTAGCCAGCAGCCTGAGAAAACCACTGTTCTCATAAACTTGGTACCCCAAGGAGTGAAATTTGATGATACAACAGCATTTTTAATCTATAAGAAATTCTGGCAGAGGGAGATTCTCAATGATGCTTCTGCCTTTGGTACCTATGAAGTGCTCTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCAAATATTTATGGCATAGATGTTGAACCATACCCTGGTCACGGCAACAATGGAACAATAGTGAAACCTTTAGGAGTAGATGTCtcaaggaagaaaaaagaagggagTGCTGGCAGAATGGTTGTTATGATCGTCCTGTCATCTTTTACTGTCTTTGTTTTATTCATTGGAGTTGCCTGGCTTTGTCTCTTGAAACGTGGTTCCTACACTCTTGAACCTGAACAAATTCCAGATGTCaaaattccatcctcttcaaaGCAATCAGGGACTGCCAGTGCTAGGTCATTGACTTATGGGAGCATGCCGGGTTCTAGATCAATGTCCTTCAGTTCTGGAGCAATGATATATACAGGATCAGctaaaatatttactttgaatgaaatagagaaagcaACAAATAACTTCAATTCTTCAAGAATAGTAGGAGAAGGTGGCTTCAGTCTTGTTTATAAAGGTAGCCTACATGACGACAGCGATGTGGCAGTGAAGATTCTCAAAAGAGATGATCAGCGTGGTGACCGTGAATTCTCAGCAGAAGCTGAGATGCTTAGCCACTTGCACCATAGAAATTTAGTTAAATTGATAGGTATATGCACAGAGAAACAGGCTCGCTGCCTAGTGTATGAGCTTGTCCCTAATGGCAGTGTGGAATCCCACTTACATGGTGCTGACAAGGAAACCGAACCACTTGATTGGGATGCTCGGATGAAGATAGCACTTGGTGCAGCTAGGGGATTGGCTTATCTGCATGAAGATTGTAATCCATGTGTCATACATAGGGACTTCAAATCCAGCAACATCTTATTGGAATATGATTTTACACCCAAAGTTTCTGATTTTGGATTGGCTAGAACAGCACTGAACGAGGGAAAAAAGCACATCTCAACACATGTTATTGGAACATTTGGCTACGTAGCTCCTGAATATGCAATGACTGGCCATCTTCTTGTCAAAAGTGATGTTTACAGCTATGGAGTAGTACTGCTTGAGCTCCTAACCGGAAGAAAGCCTGTGGATTTGTCACAGCCACCAGGTCAAGAAAACCTTGTTGCTTTGGCTCGTCCACTTCTTACAAGTAAGGAGGGTTTGCAGAAGATCATAGACCCAGTTATAAAGCCCAAAATTTCTGTTGATGCCGTGGTAAAAGTTGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTCACTCAACGTCCTTTCATGGGTGAAGTTGTTCAGGCCTTGAAGCTGGTATGCAGTGAGTTTGAGGAAACAAGTTATGTAAGACCAAAAAGTTTTCGAGAAGATGGTCTTGTAATTGGTGTAGAAGGGAAATTTTCCAGTGTTCCACGTGAGAGAGTGGGCTTTTCAGAGTGCAACAAACCCCTGCCTCAGCCTGGTTGA 2343 0.4183 MGLQLIFLLIKLHFAVCTPQVHEYAATYLHHSRIRSPSSIAFPPSQSPSGVPASIALPPSKSSSRVPGSIALSPSKSFFKIPKMKWTHSSVDSPISHRKHHYSRRKSSNYPHTLQGPPVFKSQHPLSSPMSWDFHAPAPAPAPSTAVLSHRLNVPSPSPSISPLGSSLKKTKTPPPAYALILPSPPPNKDCMSVTCSEPLTYTPPGSPCGCVWPLQVKLRISIAIYKFFPLFSELAEEIAASVLLNRNQVRIVGADATSQQPEKTTVLINLVPQGVKFDDTTAFLIYKKFWQREILNDASAFGTYEVLYVHYPGLPPSPPSNIYGIDVEPYPGHGNNGTIVKPLGVDVSRKKKEGSAGRMVVMIVLSSFTVFVLFIGVAWLCLLKRGSYTLEPEQIPDVKIPSSSKQSGTASARSLTYGSMPGSRSMSFSSGAMIYTGSAKIFTLNEIEKATNNFNSSRIVGEGGFSLVYKGSLHDDSDVAVKILKRDDQRGDREFSAEAEMLSHLHHRNLVKLIGICTEKQARCLVYELVPNGSVESHLHGADKETEPLDWDARMKIALGAARGLAYLHEDCNPCVIHRDFKSSNILLEYDFTPKVSDFGLARTALNEGKKHISTHVIGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVALARPLLTSKEGLQKIIDPVIKPKISVDAVVKVAAIASMCVQPEVTQRPFMGEVVQALKLVCSEFEETSYVRPKSFREDGLVIGVEGKFSSVPRERVGFSECNKPLPQPG 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0303 780 MobiDBLite consensus disorder prediction 40 68 - -
Ssu8g0303 780 MobiDBLite consensus disorder prediction 400 420 - -
Ssu8g0303 780 SUPERFAMILY Protein kinase-like (PK-like) 434 728 IPR011009 -
Ssu8g0303 780 Pfam Protein tyrosine and serine/threonine kinase 458 728 IPR001245 GO:0004672|GO:0006468
Ssu8g0303 780 MobiDBLite consensus disorder prediction 90 125 - -
Ssu8g0303 780 ProSitePatterns Protein kinases ATP-binding region signature. 461 483 IPR017441 GO:0005524
Ssu8g0303 780 ProSiteProfiles Protein kinase domain profile. 455 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0303 780 MobiDBLite consensus disorder prediction 399 420 - -
Ssu8g0303 780 CDD STKc_IRAK 461 729 - -
Ssu8g0303 780 Gene3D Transferase(Phosphotransferase) domain 1 531 746 - -
Ssu8g0303 780 Gene3D Phosphorylase Kinase; domain 1 427 530 - -
Ssu8g0303 780 MobiDBLite consensus disorder prediction 108 125 - -
Ssu8g0303 780 PANTHER OS01G0750732 PROTEIN 6 752 - -
Ssu8g0303 780 PANTHER OS01G0750732 PROTEIN 6 752 - -
Ssu8g0303 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0303 Ssu-Chr8 5129171 5135180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0303 188 749 Receptor kinase-like Gene Family AT5G56890 62.892 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Ssu8g0303 PK_Tyr_Ser-Thr 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0303 - - gmx:100775318 1291.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0303 8 5129171 5135180 Ssu4g3239 4 81857757 81863000 PCT