Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0294 ATGAGCCGCTACGACACCCGCTCCGGCGACCCCGCTTCCTACCGCGACCGAAGAAGTGATTCAGGGCTGGGTGCACCTTCAGTCACAGGCCACGGCGGTTCAAGCAGAAGAGACTACGACGACGGTTCGCCCCGCAAACTGAATTTGGAAGGATTGCCTCATTTCGAGAAAAACTTCTACGCCGAATCGCCCTCCGTTAGGTCAATGACGGAGGCCGAGGTTAACGACTACCGTCAGCGCCGTGAAATCACCGTCGAAGGCCGTGACGTCCCAAAACCCGTTAAGACCTTTCACGATATTGGTTTTCCGGAATATGTAATGCAAGAAGTTAAGAAAGCTGGCTTTGTTGAACCTACGCCCATTCAGTCCCAAGGTTGGCCTATGGCTTTGAAGGGACGTGATCTTATAGGAATCGCGGAAACGGGATCCGGGAAGACGCTTGCTTACTTGTTGCCTGCCATAGTTCATGTTAATGGCCAGCCAATTCTAGATCCTGGAGATGGACCGATTGTGTTAGTTTTGGCCCCGACACGTGAGCTTGCCGTTCAGATACAACAAGAGGCCACCAAATTTGGGGCATCGTCGAGGATTAAGAGCACGTGCATATATGGCGGGGTTCCAAAGGGGCCTCAGGTGCGCGATCTCCAGAAAGGTGTTGAGATTGTGATTGCCACTCCGGGAAGGTTGATTGATATGCTCGAGTCAAATCATACTAACTTGCGGAGGGTCACGTACCTGGTTTTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATACGGAAGATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCCACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAATCATAGGTTCTCCAGATTTAAAAGCTAACCATGCCATACGGCAATATGTTGACATTGTTCCTGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTGGAGGATATCATGGATGGTAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATTACTAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGCCCTATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGACGTGAAGGACGTGAAGTATGTGATAAATTATGACTTCCCTGGATCACTTGAGGATTATGTTCATCGCATAGGTCGGACAGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACGGCTGCTAATGCCAGATTTGCGAAGGAACTTATAACCATACTTGAGGAAGCTGGACAGAGAGTGAGTCCTGAATTGGCAGCAATGGGGCGCAGTGCACCCCCTCCACCTTCAGGAGGCTTCCGAGACCGTGGGAAGGGTTATGGCAGCGGTCGCCCATGGAGCTGA 1500 0.492 MSRYDTRSGDPASYRDRRSDSGLGAPSVTGHGGSSRRDYDDGSPRKLNLEGLPHFEKNFYAESPSVRSMTEAEVNDYRQRREITVEGRDVPKPVKTFHDIGFPEYVMQEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNGQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSPDLKANHAIRQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRSAPPPPSGGFRDRGKGYGSGRPWS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0294 499 MobiDBLite consensus disorder prediction 469 499 - -
Ssu8g0294 499 Pfam Helicase conserved C-terminal domain 326 435 IPR001650 -
Ssu8g0294 499 Gene3D - 305 476 IPR027417 -
Ssu8g0294 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 474 IPR001650 -
Ssu8g0294 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 451 IPR027417 -
Ssu8g0294 499 MobiDBLite consensus disorder prediction 1 48 - -
Ssu8g0294 499 Gene3D - 58 304 IPR027417 -
Ssu8g0294 499 CDD SF2_C_DEAD 314 444 - -
Ssu8g0294 499 PANTHER LD32873P 36 486 - -
Ssu8g0294 499 SMART ultradead3 114 317 IPR014001 -
Ssu8g0294 499 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 247 255 IPR000629 -
Ssu8g0294 499 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 486 - -
Ssu8g0294 499 Pfam DEAD/DEAH box helicase 119 290 IPR011545 GO:0003676|GO:0005524
Ssu8g0294 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 95 123 IPR014014 GO:0003724
Ssu8g0294 499 SMART helicmild6 354 435 IPR001650 -
Ssu8g0294 499 MobiDBLite consensus disorder prediction 1 17 - -
Ssu8g0294 499 MobiDBLite consensus disorder prediction 34 48 - -
Ssu8g0294 499 CDD DEADc_DDX5_DDX17 106 301 - -
Ssu8g0294 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 301 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0294 Ssu-Chr8 5019534 5024899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0294 82 455 Eukaryotic Initiation Factors Gene Family AT3G19760 34.400 2.83e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0294 K12823 - gmx:100781619 917.916