Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0288 ATGGCTAAAGCAATGAAGGAAAAGCCTAAGCTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTCTTTTCCCTTCAATtGTCTATGTCCAAATGGAAAGCCTGCTTGTGTGACTATCAAGATAGATGACAAGAGGATGGCGAAAACGACCCAAGAACGTGAACGCGTCTGGAATCAAACCTTTCAGATTCAGTGTGTTCATCCAGCAGATTCAACTATCACCATTACACTGAAAACATCATGCTCTATTTTGGGGAAATTCCACATGCAGGCCCAGCGGTTGAAGGAAGAGAGTTTGATCAATGGGTTCTTCCCTCTCCTCATGGAAAATGGAAAACCAAACCCGCTACTAAAATTAAGACTCATGTTGTGGTTCAAGCCAGCAAATTTGGAACTAAGTTGGACAAAGCTACTAAGTAATGGGGAATTTCAAGGGCTGAGGGATGCTACGTTCCCACAAAGGTCTAATTGCCAAGTTAAGCTCTATCATGATGCTCACCATTCATCTACTTTCCACCCTCCTTTTGGTCTATGTGGAGCTCCAAGAAAGCTGTGGGAAGATGTCTATAAAGCAATTGAGGGTgcaaaatatttagtttatattgcAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTCGAGATCCTCAAACTGAAATTCCACATGCCAGGGAGATAAAGCTGGGTGAGCTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCCGTGAGGGTTATGATTTGGGATGATGAAACATCTTTGCCTTTTATTAAGAACAAAGGTGTGATGAACACCCATGATGAGGACGCTTTTGCGTACTTCAAACACACAAAAGTAATATGCAGAAAGTGTCCAAGGTTACACCACAAGTTCCCCACACTATTTGCTCACCATCAGAAGACCATAACTGTGGACACCAGAACGCCCAACTCTGTTCATGCCAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGATGGCCGATATGACACAGAGAAACACTCATTGTTTCAGACACTTGCTGAGGAATCCCATTACCATGACTTCTACCAGACAAACATTGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATACTTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACTAAACAATGTGATCCTTCTCTTCTAGTCCCTGCTAGCACCTTGGAAAATCTCATTCCCACATGCTTAAACATTCCCAAAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTGTCGGCTAGCCAATTGTTTAGAAAGCTAACTGTGGAGAGAAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGACAGGTTTGTATACATTGAAAACCAATATTTTATTGGGGGGTGCCATTTGTGGCAGAAAGATAGGCATAGTGGATGCAGGAATCTGATTCCTGTGGAGATTGCACTCAAGGTGGTCAGTAAGATTAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAGGATATACTGCATTGGACCAGAGAAACAATGACAATGATGTATAACTTGATTGGAGAAGCAATAGTAGAAAGTGGGGAGCCAGGGCATCCAAGAGATTACTTGAATTTCTTCTGCCTTGCAAATagggaaaagaagggaaaagagGAGTATCTTCCACCACATTCTCCCCATCCTGAAACACAATACTGGAATGCACAAAAGAATAGGAGATTCCCGGTTTATGTTCACTCCAAGATCATGATAGTGGACGACCTATACATATTAATAGGATCAGCCAATGTGAACCAAAGATCCATGGATGGGCAAAGGGACACTGAGATTGCCATAGGGGCCTACCAGTCTCAAGATGGAGCTGATCACCACACAAGCCGTGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAGCACACTGGAAGCGCCGAGGAATTGTTCTTAGAGCCAGAAAGTTTAGCATGTGTGCAGAGAATGCGATCAATAGGAGATCACATGTGGGAAAGCTACACTAGTGAAGAAATTGTGGACATGGAAGGTGTGCACCTTGTAACTTACCCTGTGAAAGTAACCCAAGAAGGGTCTGTGGAGGATCCTGAGGATGGTGGGGATCATTTTCCTGATACAAAATCTCCAGTGAAAGGGAAGAGATCTAAATTCTTAGCACCTCTCTTTACCACTTAA 2289 0.4286 MAKAMKEKPKLLIHGTIEATIFNATPYSPSFPFNCLCPNGKPACVTIKIDDKRMAKTTQERERVWNQTFQIQCVHPADSTITITLKTSCSILGKFHMQAQRLKEESLINGFFPLLMENGKPNPLLKLRLMLWFKPANLELSWTKLLSNGEFQGLRDATFPQRSNCQVKLYHDAHHSSTFHPPFGLCGAPRKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDTRTPNSVHAREIMSFLGGLDLCDGRYDTEKHSLFQTLAEESHYHDFYQTNIAGASLNKGGPREPWHDAHTCVTGEAAWDVLTNFEQRWTKQCDPSLLVPASTLENLIPTCLNIPKERNWKVQVYRSIDHVSASQLFRKLTVERSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDRHSGCRNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYNLIGEAIVESGEPGHPRDYLNFFCLANREKKGKEEYLPPHSPHPETQYWNAQKNRRFPVYVHSKIMIVDDLYILIGSANVNQRSMDGQRDTEIAIGAYQSQDGADHHTSRGDIHAYRMSLWYEHTGSAEELFLEPESLACVQRMRSIGDHMWESYTSEEIVDMEGVHLVTYPVKVTQEGSVEDPEDGGDHFPDTKSPVKGKRSKFLAPLFTT 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0288 762 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 607 634 IPR001736 GO:0003824
Ssu8g0288 762 SUPERFAMILY Phospholipase D/nuclease 148 410 - -
Ssu8g0288 762 Pfam Phospholipase D Active site motif 301 337 IPR001736 GO:0003824
Ssu8g0288 762 Pfam Phospholipase D Active site motif 611 634 IPR001736 GO:0003824
Ssu8g0288 762 Gene3D Endonuclease Chain A 421 658 - -
Ssu8g0288 762 Pfam Phospholipase D C terminal 679 751 IPR024632 -
Ssu8g0288 762 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 44 135 IPR035892 -
Ssu8g0288 762 SUPERFAMILY Phospholipase D/nuclease 425 691 - -
Ssu8g0288 762 Gene3D Endonuclease Chain A 185 420 - -
Ssu8g0288 762 Pfam C2 domain 44 114 IPR000008 -
Ssu8g0288 762 MobiDBLite consensus disorder prediction 729 750 - -
Ssu8g0288 762 PANTHER PHOSPHOLIPASE D ALPHA 8 762 - -
Ssu8g0288 762 SMART pld_4 607 634 IPR001736 GO:0003824
Ssu8g0288 762 SMART pld_4 300 337 IPR001736 GO:0003824
Ssu8g0288 762 PANTHER PHOSPHOLIPASE D 8 762 IPR015679 -
Ssu8g0288 762 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 300 337 IPR001736 GO:0003824
Ssu8g0288 762 PIRSF PLD_plant 4 762 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0288 Ssu-Chr8 4935580 4938310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0288 35 762 Phospholipase D Gene Family (Wang group) AT1G55180 62.517 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0288 K01115 - gmx:100807431 1454.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0288 8 4935580 4938310 Ssu8g0288 8 4935580 4938310 ECH
Ssu8g0288 8 4935580 4938310 Ssu4g3248 4 82015334 82018744 PCT