Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0285 ATGAGTCGAGAACAACAGAAGCGAGTTAAGCAAGAAAAAGGTTCCGATGATGCTGAAAAGGTTATTGTTGCTGTTAAGGCATCAAAGGAAATTCCAAAAACTGCTCTTGTTTGGTCCCTAACTCATGTTGTGCAACCTGGCGATTGCATTACACTGCTCGTGGTTGTACCTTCACAAAGTTCAGGCCGAAGATTATGGGGTTTTCCAAGGTTTGCTGGCGACTGTGCCAGTGGTCACAAGAAGTCTACTTCAGGAACAAATTCAGAACAGAAGAGTGATATCAGTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCTAACAAGATAAATGTGAAGATTAAAATTGTTTCTGGATCACCCTGCGGAGCAGTGGCTGCGGAAGCCAAGAAAGCCCAAGCCAATTGGGTCGTATTAGACAAACAACTCAAACATGAGGAAAAACAATGCATGGAAGAGCTGCAGTGTAACATTGTGGTTATGAAGCGTTCCCAACCTAAGGTACTCCGCTTGAATTTGGTTGGATCACAAAAGAAGGATCTTGAAGAGTTATGTCCATTACCTTCTGAACAAGATGAGATGCCTGGAAAACAAACTAAGAAGAAGAATGATTCCTTAAGTTCCATAAAAGGACCAGTTGTCACTCCAACTAGCAGCCCTGAGCTGGGGACACCGTTTACTGCAACTGAAGCTGGTGCTTCATCGGTTTCAAGCTCCGATCAAGGAACTTCACCATTTTTCATCTCTGAGATGAATGGTGAGTCAAAGAAAGAGGAAACTATCAAAGAAAATCCGGAACTTGATGATTGTATATCAGACACAGACAGTGAAAATTTGTCCACATCTTCAGCAAGCTTGAGATTTCAGCCATGGATCACAGATTTTCTTTTGCATCAACGATCATCTCAACCTAAGGAAGAAAGAACAGAGAGATCTCATAACAGGCTTCAATCATCTACCACTAGGGCTTTGCTAGAGAAGTTCTCAAGACTTGATAGAGAAGCTGAAATTGAAATCTCAACCTATAAGACTGACTTGGATTTCAGTGGAAATGTAAGAGAAGCAATAGCATTATCTAGAAATACCCCACCTGGTCCACCTCCGTTATGTTCAATCTGTCAGCACAAGGCTCCTGTTTTTGGAAAACCTCCCCGATGGTTCAGCTATGCTGAATTGGAGCTTGCCACTGGTGGATTTTCACAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGAATTCTGCCAGATGGTCAAGTCATTGCTGTCAAGCAACATAAATTGGCCAGTTCTCAGGGTGATCTTGAATTCTGCTCAGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGTTGATTGGGTTCTGTATAGAGGATAAGAGAAGGCTATTGGTTTATGAGTACATATGTAATGGATCGTTGGATTCTCATTTATATGGGAGACAGCGAGAAACATTAGAATGGTCTGCACGGCAAAAAATTGCTGTTGGAGCTGCTCGAGGATTGCGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCACCGTGACATGCGGCCAAACAACATTCTTATCACTCATGATTTTGAGCCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGCGACACAGGAGTGGAAACTAGAGTAATTGGAACATTTGGGTACTTGGCTCCGGAATATGCTCAAAGTGGCCAAATTACTGAAAAGGCTGATGTTTATTCGTTTGGTGTGGTATTAGTGGAACTTGTTACAGGGCGAAAGGCTGTGGATCTCAACCGGCCAAAGGGACAACAGTGTCTTACTGAGTGGGCACGGCCACTGTTAGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGTCATTATTCGGAACATGAGGTCTGTTGCATGCTACATGCTGCATCGTTATGCATAAGGCGAGATCCTTATTCTAGACCACGCATGTCACAGGTTCTGCGAATACTGGAGGGTGACATGGTCATGGACCCAAATTACATTTCAACTCCCAACTCCCAGTTATGA 2076 0.4355 MSREQQKRVKQEKGSDDAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGHKKSTSGTNSEQKSDISDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKQCMEELQCNIVVMKRSQPKVLRLNLVGSQKKDLEELCPLPSEQDEMPGKQTKKKNDSLSSIKGPVVTPTSSPELGTPFTATEAGASSVSSSDQGTSPFFISEMNGESKKEETIKENPELDDCISDTDSENLSTSSASLRFQPWITDFLLHQRSSQPKEERTERSHNRLQSSTTRALLEKFSRLDREAEIEISTYKTDLDFSGNVREAIALSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGILPDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRETLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVCCMLHAASLCIRRDPYSRPRMSQVLRILEGDMVMDPNYISTPNSQL 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0285 691 ProSiteProfiles Protein kinase domain profile. 403 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0285 691 Gene3D Transferase(Phosphotransferase) domain 1 479 683 - -
Ssu8g0285 691 MobiDBLite consensus disorder prediction 304 323 - -
Ssu8g0285 691 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 689 - -
Ssu8g0285 691 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Ssu8g0285 691 MobiDBLite consensus disorder prediction 209 250 - -
Ssu8g0285 691 Pfam Protein kinase domain 407 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0285 691 MobiDBLite consensus disorder prediction 304 319 - -
Ssu8g0285 691 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Ssu8g0285 691 Gene3D HUPs 4 184 IPR014729 -
Ssu8g0285 691 SUPERFAMILY Protein kinase-like (PK-like) 387 681 IPR011009 -
Ssu8g0285 691 PANTHER OS01G0253100 PROTEIN 16 689 IPR045271 GO:0004714|GO:0006468
Ssu8g0285 691 CDD STKc_IRAK 409 675 - -
Ssu8g0285 691 MobiDBLite consensus disorder prediction 189 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0285 Ssu-Chr8 4895813 4899519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0285 383 677 Trihelix Transcription Factor Family AT1G70460 53.974 1.41e-102 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Ssu8g0285 Pkinase 8.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0285 - - gmx:100789216 1317.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0285 8 4895813 4899519 Ssu8g0285 8 4895813 4899519 ECH
Ssu8g0285 8 4895813 4899519 Ssu4g3252 4 82058418 82062525 PCT