Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0277 atgGCGACAGTAGCAGGACAGCTGATTTGGGAGATCGTGAAGAAGAACAACTCTTTCTTGGTGAAAGAGTTCGGAAGGGGCACTCAAAGCGTGCAGTTCAGCAGAGAACCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCTGgtTTGGCGAACAAGAAAACTGTCACTATTCAGGCTGCTGGTAAAGACCAGTCTGTGTTGCTAGCAACAACCAAGACGAAGAAACAAAATAAGCCTAACGCTTTGCTTCACAGATCTCTCATGAAAAAGGAGTTTCGAAGGATGGCAAAGGCAGTGCAAAATCAGGTAGCAGATAACTACTACAGGCCTGATCTCAAAAGGCTGCTCTGGCAAGGTTGA 366 0.4508 MATVAGQLIWEIVKKNNSFLVKEFGRGTQSVQFSREPNNLYNLNTFKYSGLANKKTVTIQAAGKDQSVLLATTKTKKQNKPNALLHRSLMKKEFRRMAKAVQNQVADNYYRPDLKRLLWQG 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0277 121 Gene3D - 6 120 - -
Ssu8g0277 121 Pfam Ribosomal L28e protein family 8 116 IPR029004 -
Ssu8g0277 121 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 116 - -
Ssu8g0277 121 PANTHER 60S RIBOSOMAL PROTEIN L28 1 116 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0277 Ssu-Chr8 4771738 4773331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0277 1 116 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.414 9.14e-61 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0277 K02903 - gmx:100499963 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3272 4 82424016 82425754 Ssu8g0277 8 4771738 4773331 ECH
Ssu8g0277 8 4771738 4773331 Ssu8g0277 8 4771738 4773331 ECH
Ssu8g0277 8 4771738 4773331 Ssu4g3272 4 82424016 82425754 PCT