Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0272 ATGGATGGTCTAAGTTGGGATGCCTCAACACAACTTGTTGCTAACATACCGATCTTGTGGAGCACTCAGAATCAAGACCTTGAAGCAGACTACCACTCCATGCCCCACCTAAGTTCAAGTGTTCTCAACCAAACATGCTATCCAAATCCCAGTTCTGAAAAAGTGAGGGACATGGTTCAGTCATCCGCTTCTGAGATAATGAGTATGATGCCAAACACAAATCTGCCACAAAGAACAGCAACCATGCCTGTAACATCAGGAGCAGCTGGAGCCAGTTGGGAAGAGGCTTTAACACCCCAATCATGCCCGTCCCTTTCGGTCACTATGAACCAAACTAGCAATTATGTAGCAGATTTCAATATGGCCCACCAGCAACAACACCTTATCAATGGCACACAAAACGGCAAGGCTGCTACCTGCTCTCTTGAGTCACTTGCTTGCTTGCTTTCAGCTACTAACAATAGCAATCCAGACACGTCTGTCGAAGATGATGGCATTTCCATGATTTTATCTGACTGCAGAAACCTATGGAACTTCAGTTATGGCAGTGCAGTATCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCTAGAAACAGTAGTGACATGCGGTATCCAGTCAATGAGCTGGATGAAACAGTATCTCAAAGTTTCTCTAATCAATATCTCAGTCAAGGAAGAGTTATAGATTCTGAAGTTATTTGCACAAAAAGGAACAATTCCTGCTTCAGCATTGCTCAGAATTCTTCTGCCACTGAAGGTGTTTTCAAGCTTATCTCAGAGACTTCACCAAAGTCCAAGAAACCCAGATGGGATCATAAGCGTCCTACTTCATCAAATATCAACTTCCAGCAGCCAAATTCTTCTGTGACACCTTCCTTTGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATACGGGGCTGCAGCTTTTAGGCCAGTGATCTTGGGCTGGGAAGTGGTGGAAAAGCCTAAAAGGAAGAATGTTAGGATATCAACTGATCCACAGACTGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATAGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGAAGAAGCTGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCACTAGAAAATCTAGGTAACAAGCTTGACACAATGAATTGTCCGCCTACTAACATAGCCTTCTCTTTCAACCCTTCCTTTCCCATACAAACACATCTCCCCATCCAAAACCCTAGCAGCCACATCCAACATTCCAAGGGTTGA 1311 0.4432 MDGLSWDASTQLVANIPILWSTQNQDLEADYHSMPHLSSSVLNQTCYPNPSSEKVRDMVQSSASEIMSMMPNTNLPQRTATMPVTSGAAGASWEEALTPQSCPSLSVTMNQTSNYVADFNMAHQQQHLINGTQNGKAATCSLESLACLLSATNNSNPDTSVEDDGISMILSDCRNLWNFSYGSAVSSGESESNASNARNSSDMRYPVNELDETVSQSFSNQYLSQGRVIDSEVICTKRNNSCFSIAQNSSATEGVFKLISETSPKSKKPRWDHKRPTSSNINFQQPNSSVTPSFEEPDPEAIAQMKEMIYGAAAFRPVILGWEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLEEAANYLKFLRSQVKALENLGNKLDTMNCPPTNIAFSFNPSFPIQTHLPIQNPSSHIQHSKG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0272 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Ssu8g0272 436 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 434 IPR045843 GO:0003700|GO:0006355
Ssu8g0272 436 PANTHER TRANSCRIPTION FACTOR BHLH87 1 434 - -
Ssu8g0272 436 MobiDBLite consensus disorder prediction 262 296 - -
Ssu8g0272 436 SMART finulus 341 390 IPR011598 GO:0046983
Ssu8g0272 436 MobiDBLite consensus disorder prediction 276 294 - -
Ssu8g0272 436 Gene3D - 340 403 IPR036638 GO:0046983
Ssu8g0272 436 Pfam Helix-loop-helix DNA-binding domain 345 384 IPR011598 GO:0046983
Ssu8g0272 436 Coils Coil 374 394 - -
Ssu8g0272 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 400 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0272 Ssu-Chr8 4714347 4715657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0272 110 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.398 5.87e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0272 HLH 2.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0272 - - gmx:100793830 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0272 8 4714347 4715657 Ssu8g0272 8 4714347 4715657 ECH
Ssu8g0272 8 4714347 4715657 Ssu4g3284 4 82642242 82643609 PCT