Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0270 ATGCCCAAAAGAAATCTAGCCTCCAGTGGGTTAGATGGCACCATAATTGCGTCATTTTTGGAGCTCAAATTCTTAGAATCCTTCAATTTATCAGGGAACAGACTCTCAGGTGAAATTCCTTCACTTCTCAAGGAAAGATCAAATAATGGTTCACTTTTATTGAGTGTGGATGGAAATCCGGATCTCTGCCTGGTGGGCCCATGTGAAGAGGACAAAAAGAACATTGTCCCACTTGTTGCAGGCATTCTTTCAGCAGCAGTCTTTTCCATTGTATTGGGTACCGTACTGACTGTCATTTGGAGAAGGAGATGCTTCAGAAAACCAGATGCAAGAAGAGAACGATTGAGTTGGAGACAGAGGATTCAGATAGCAGTTGATGCTGCTCAAGAAAGCCTCAAGAAGCTTATTGTTAACCATACAAAGATGAATATCAATAGCACCGAAGCACTTTTTGTGCTCTTTGCATTTGTCTTCTTGGCTTGGGGCAATGCACAAAATACCCTTGTGCCAGCGATCATAACATTTGGTGACTCAGCCGTGGATGTGGGGAATAATGATTATCTACCCACCCTTTTCAAGGCTAACTACCCTCCTTATGGAAGGGACTTTGTCAACCATCAACCCACTGGGAGGTTCTGCAATGGGAAATTAGCTACTGATATTACTGCCGAAACTCTGGGTTTTAAGAGGTATGCACCTGCATATCTTAGCCCTCAGGCATCAGGGAAGAATCTTCTTATTGGAGCAAACTTTGCTTCAGCTGCCTCTGGTTATGATGAAAAGGCTGCTATTTTGAATcatgCGATTCCATTATCTCAACAgttaaaatattacaaggaaTACCAAGGCAAGCTGACCAAGGTAGCTGGCAGAAAAAAAGCAGCATTGATTGTTAAGGATGCACTGTACATATTGAGTGCTGGCAGTAGTGACTTTGTGCAAAACTATTACGTCAATCCTTTGATCAACAAAGCCTTCACTCCTGATCAGTATTCTGGATACCTTGTGGGTGCATTTTCGAGCTTTGTTAAGGACTTGTATAGATTGGGAGCCAGGAAAGTTGGAGTGACTTCACTCCCACCTCTGGGTTGCCTACCTGCTGCAAGAACTTTGTTTGGTTTCCATAAGAATGGTTGTGTCTCAAGAATCAACAACGATGCCCAAGGatttaacaagaaaatcaaGTCAGCTGCAGCAAATCTCCAAAAGCAACTTCCTGGTCTTAAGATTGTTATCTTTGATATTTATAAACCTCTTTTTGACCTTGTTCTGTCCCCTTCAAAATTTGGTTTTGTGGATGCAAGAAGAGGTTGCTGTGGTACTGGGAGAGTGGAGACAACATCTTTATTGTGCAATCCGAAATCACTAGGAACTTGTTCTAATGCAACCCAATATGTGTTTTGGGACAGCGTCCATCCTTCACAAGCTGCTAACCAAGTTTTAGCCGATGCATTGATTGTACAAGGCATAGCCCTTATCACTTAA 1485 0.4162 MPKRNLASSGLDGTIIASFLELKFLESFNLSGNRLSGEIPSLLKERSNNGSLLLSVDGNPDLCLVGPCEEDKKNIVPLVAGILSAAVFSIVLGTVLTVIWRRRCFRKPDARRERLSWRQRIQIAVDAAQESLKKLIVNHTKMNINSTEALFVLFAFVFLAWGNAQNTLVPAIITFGDSAVDVGNNDYLPTLFKANYPPYGRDFVNHQPTGRFCNGKLATDITAETLGFKRYAPAYLSPQASGKNLLIGANFASAASGYDEKAAILNHAIPLSQQLKYYKEYQGKLTKVAGRKKAALIVKDALYILSAGSSDFVQNYYVNPLINKAFTPDQYSGYLVGAFSSFVKDLYRLGARKVGVTSLPPLGCLPAARTLFGFHKNGCVSRINNDAQGFNKKIKSAAANLQKQLPGLKIVIFDIYKPLFDLVLSPSKFGFVDARRGCCGTGRVETTSLLCNPKSLGTCSNATQYVFWDSVHPSQAANQVLADALIVQGIALIT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0270 494 Gene3D Ribonuclease Inhibitor 3 75 IPR032675 -
Ssu8g0270 494 Pfam GDSL-like Lipase/Acylhydrolase 172 484 IPR001087 GO:0016788
Ssu8g0270 494 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 143 493 - -
Ssu8g0270 494 SUPERFAMILY SGNH hydrolase 172 485 - -
Ssu8g0270 494 CDD SGNH_plant_lipase_like 170 486 IPR035669 -
Ssu8g0270 494 Gene3D SGNH hydrolase 162 489 IPR036514 -
Ssu8g0270 494 PANTHER GDSL ESTERASE/LIPASE EXL3 143 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0270 Ssu-Chr8 3998558 4003515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0270 150 486 Pollen Coat Proteome AT1G75910 34.706 1.91e-60 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0270 - - gmx:100795716 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0270 8 3998558 4003515 Ssu8g0270 8 3998558 4003515 ECH
Ssu8g0270 8 3998558 4003515 Ssu4g3294 4 83084129 83085722 PCT