Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0264 ATGTCTTGGCAAATCTACGTGGGTGACGACCTCATGTGCGATTTCGACCGCCACAACCTCGTGGCCGCCGCCATCATCGATCACGACGGCACTGTCTGGGCCCAGACCTGCAAATTTCCTGACTTTAAGGGTCAAGAAATTGAAGCCATTATGAAAGATTTTGATGAACCCGGCAGCCTTGCCCCAACGGGCTTGCACCTCGGTGACACCAAGCACATCGTCATCCAAGGTGAATCTGGAGCTGTCACCCGCGGCAAGAAGGGTGCTGGCGGGATCACTGTCAAGAAAACTAATCAAGCTCTCGTGATTGGTATCTTTGAGAAACCTGTGACCCCAGGACATTGTAACACGATTGTTGAGAGGTTGGGAGATTATTTGATTGAGCAGGGGCTCTGGATCTCCTCTCAAGTCTCAACCTCTTcctttcacattttatatacaGTTTCGGCCTTGCATCTTCTTTTCCATGTCTAA 474 0.4873 MSWQIYVGDDLMCDFDRHNLVAAAIIDHDGTVWAQTCKFPDFKGQEIEAIMKDFDEPGSLAPTGLHLGDTKHIVIQGESGAVTRGKKGAGGITVKKTNQALVIGIFEKPVTPGHCNTIVERLGDYLIEQGLWISSQVSTSSFHILYTVSALHLLFHV 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0264 157 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Ssu8g0264 157 PANTHER PROFILIN-A 1 131 - -
Ssu8g0264 157 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Ssu8g0264 157 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Ssu8g0264 157 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Ssu8g0264 157 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Ssu8g0264 157 CDD PROF 2 130 IPR005455 GO:0003779
Ssu8g0264 157 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Ssu8g0264 157 Pfam Profilin 1 130 IPR005455 GO:0003779
Ssu8g0264 157 SMART prof_2 1 131 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0264 Ssu-Chr8 3949903 3951408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0264 1 131 Cytoskeleton Gene Families AT4G29340 67.910 2.19e-64 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0264 K05759 - gmx:100809393 222.631