Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0263 ATGGGCAAAGCTACCAGGTGGTTGAAGGGGTTGTTGGGAATGAAGAAAGAGAGGGACTACGGTGGCTATTCGGGCTCATTGGCTCTTGAGAAGAGGGAAAAGAAACGATCAGGGAAGGATGAAGTGAGTAACATTACTCCAACTAGTGTTACTGCCTTTGATCGTGCTAGGCACAGATCCTATGTTGCTGAAAAAGAGGATGTGAAGAACAACCACACAATTGATGTGGCTGTTGTGAGGTCAAGAAGTTGTGACAGAGGCACCTTGCTTATTGGAAGCAGGGAGGCCTGGGCTGCTGTGAAGATTCAATCCTTTTTCAGAGGTTATTTGGCTCGAAAGGCTCTTAGAGCACTCAAAGGATTGGTTAAGTTACAGGCTCTTGCTAGGGGGTATCTAGTTCGAAAAAGGGTTGCTGCAACTCTTCACAGTATGCAAGCTATGATTAGAGCTCAAGCTGTTGCTCGATCAGTGCGAGCTCGACGTTCCGTGGACAAGGAGAATAATAGATTTCATCCAGAAACTCCTTCCAGAAAATATGTGCAACGGTTTGATGAAACAAGAAATTGTCAATTACACAATAGAAGGCTACCCATATACTGTAAGGCACCCTTGAATGGATTTGATGAGAGTCCGAAAGTTGTTGAGGTTGACACTCACATGCCTCATTCAAGATGTAGGAGCATCAACACTGCGATGTCTGAATGTGGAGAAGACCTGCACTATCAAGCAATATCATCCTCTCTTCGATGTCCAGTTCATGAAAGTAGGCACCCTCAAGAGTTTGAATGGTTCTTCAACGTTGATGAAGGTAACAAGTTCCCCACATCGCACAACACGCCTCGTTTAGCAAAATGTATGCTACCAAATACCCCAGGTACTCCAGTGAAGAGTGTTTGTGGAGACACCTTCTTTAGGCCTTGCTCCAATTTCCCTAACTACATGGCCAACACTCACTCTTCTAAGGCCAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAGCTCAAGAAAAGGCTTTCAATCAATGAAATGATGGCAGCGAGAAATAGTGTTAGTGGTGTTAGAAAGCAGTGGTCATCCAACCCAAAAACTCAAGATTACTGTTTTTTTGACAAGGTTATTTAG 1128 0.4433 MGKATRWLKGLLGMKKERDYGGYSGSLALEKREKKRSGKDEVSNITPTSVTAFDRARHRSYVAEKEDVKNNHTIDVAVVRSRSCDRGTLLIGSREAWAAVKIQSFFRGYLARKALRALKGLVKLQALARGYLVRKRVAATLHSMQAMIRAQAVARSVRARRSVDKENNRFHPETPSRKYVQRFDETRNCQLHNRRLPIYCKAPLNGFDESPKVVEVDTHMPHSRCRSINTAMSECGEDLHYQAISSSLRCPVHESRHPQEFEWFFNVDEGNKFPTSHNTPRLAKCMLPNTPGTPVKSVCGDTFFRPCSNFPNYMANTHSSKAKLRSHSAPKQRPELKKRLSINEMMAARNSVSGVRKQWSSNPKTQDYCFFDKVI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0263 375 SMART iq_5 117 138 IPR000048 GO:0005515
Ssu8g0263 375 SMART iq_5 94 116 IPR000048 GO:0005515
Ssu8g0263 375 PANTHER IQ-DOMAIN 5-RELATED 1 375 - -
Ssu8g0263 375 Gene3D - 55 121 - -
Ssu8g0263 375 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 375 - -
Ssu8g0263 375 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Ssu8g0263 375 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515
Ssu8g0263 375 Pfam IQ calmodulin-binding motif 122 136 IPR000048 GO:0005515
Ssu8g0263 375 Pfam Protein of unknown function (DUF4005) 279 354 IPR025064 -
Ssu8g0263 375 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0263 Ssu-Chr8 3939139 3940773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0263 1 356 IQD Protein Family AT3G16490 44.949 3.35e-87 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0263 - - gmx:100806729 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0263 8 3939139 3940773 Ssu8g0263 8 3939139 3940773 ECH
Ssu8g0263 8 3939139 3940773 Ssu4g3306 4 83326803 83328573 PCT