Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu8g0262 | ATGATGGGTGAAAGGTCAAGAAACGAGGCATCTCCGCAGCTGTTGGATTTGATGAACAGAAACGAAGGAAAGTCTTCAGAGGAGAGAAAGCTTGAACTGAGGCTAGGTCCACCTGGTGAGGAGTGGTCTCTCGGTGGCAAAACAAAGAACAACAACACAGAAAGAGAAGAGTCTCTACTCTCTCTTGGTTGCTTCTCTTCTTCCAGCTTGTCTCATGTAGTACTCAGCCCCAACAATGGTTTCCCAAGCAAGGACACCCCTACTGCTATGTTGTCCTCCTCTCCATGGCCAAGCTACCACCATGGTAGCAACAAAACTTCTTCATTTCTTCAGTTCCCATCAACACCACCTGTGATGGGAAAAGATGCATCACAGGCCTGTTGCCCTAAGGTGGTAGAGTTGCAGAATGGTGATAACAACAAAGTGTTCTCTACCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAAATGCTCCAGCTCCAGTGGTGGGGTGGCCTCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGTTCTAAGCCACCTCCTGAGTCACAGCCTGAGCAGCATAACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGGTAAAGGTTTGTTTGTCAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTACGAAAATCTCTCGTCTGCTGTGGACGAGCTATTCAGAGGCCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGTGTTCACAACAAGCAGGAGGAAGAGAAAGCCATTACGGGTTTATTGGATGGGAGTGGAGAGTATACACTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGGGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAAGACAAGATACCACTTGACTCGACAATGAAATGA | 1011 | 0.4698 | MMGERSRNEASPQLLDLMNRNEGKSSEERKLELRLGPPGEEWSLGGKTKNNNTEREESLLSLGCFSSSSLSHVVLSPNNGFPSKDTPTAMLSSSPWPSYHHGSNKTSSFLQFPSTPPVMGKDASQACCPKVVELQNGDNNKVFSTSSANTAVSQPNTSQKRNAPAPVVGWPPIRSFRKNLASSSKPPPESQPEQHNKVAGKKPVDNYGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQDKIPLDSTMK | 336 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu8g0262 | 336 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 20 | 327 | IPR003311 | GO:0005634|GO:0006355 | |
| Ssu8g0262 | 336 | MobiDBLite | consensus disorder prediction | 177 | 191 | - | - | |
| Ssu8g0262 | 336 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Ssu8g0262 | 336 | ProSiteProfiles | PB1 domain profile. | 210 | 314 | IPR000270 | GO:0005515 | |
| Ssu8g0262 | 336 | MobiDBLite | consensus disorder prediction | 142 | 163 | - | - | |
| Ssu8g0262 | 336 | Gene3D | - | 205 | 325 | - | - | |
| Ssu8g0262 | 336 | Pfam | AUX/IAA family | 31 | 319 | IPR033389 | - | |
| Ssu8g0262 | 336 | SUPERFAMILY | CAD & PB1 domains | 206 | 311 | - | - | |
| Ssu8g0262 | 336 | MobiDBLite | consensus disorder prediction | 85 | 106 | - | - | |
| Ssu8g0262 | 336 | MobiDBLite | consensus disorder prediction | 21 | 36 | - | - | |
| Ssu8g0262 | 336 | MobiDBLite | consensus disorder prediction | 142 | 203 | - | - | |
| Ssu8g0262 | 336 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA26 | 20 | 327 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu8g0262 | Ssu-Chr8 | 3906802 | 3909474 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu8g0262 | 214 | 325 | B3 DNA Binding Superfamily | AT4G23980 | 33.929 | 4.03e-14 | 71.2 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | AUX/IAA | Ssu8g0262 | AUX_IAA | 2.5e-72 | CL0072 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu8g0262 | K14484 | - | gmx:100799244 | 490.345 |
Event-related genes