Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0260 ATGTTTGACGTGTTGCCCGGTGAGATCACTGTTGAGGGCAATGGCTGGGATTATATATTCATCAGGAAAAACTGTTCTTGTGCTGCTGGTATGAAGAAGTATGTGTCTAACACCACGCTCACTGTGAAATCCAATGGAGGGTTTGCGCATGATTTGGTGATGGAAGCCTATGATGGGCTTGCTCTCTTGCCCAACACGACGCGTTGGGCAAGAAAAGGTGGTGTCATATCACTTAGCTTGTTCTGTAGCTGCTCCAGTGGACTGTGGAACTATTTGATGAGCTATGTCATCAGAGATGGGGATAGTGTAGAATCGCTAGCAAGCCGGTTTGGGGTTAGCATGGATAGCATTGAGACAGCGAACGGCATTGACAATCCTGATAGCCTCACTGTTGGCTCTCTCTATTATATACCTTTGAATTCGGTTCCTGGTGAGCTTTACCACTTGAAGAATGACACTCCTCCAGTTCCAGTCCCTTCCCTATCTGTTGATAATTTTTCAGcTGACCAAGTCAACCATAAGGCTCATGTACCCCATGAGTGGATCGTAGGAGGTTTAGGGGTTGGTCTTGCTCTGATAATATTAAGCATTATTCTGTGTGTGTCCCTGAGATCACCCAACTGTTTGGTTGAAGCCAGAAATAATGCAAAAGATTCCGAGGGAAAGATCTCTAATAAGTTCTATGTTTTTGGGAATTCAAGTTTGTTTTGTGGATGTGGCAAACCTGGGGACCCGAAGCAAACTGATGGTGAATCCATTAGTCACCAAATTACCGTTACCAAAGCATCAACTCTAATACCTGACATGTTGGACATGGACAAGCCTGTAGTTTTTTCATATGAAGAGATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGCACAGAACATATGGTTCTGTTTACTACGGTCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATGACAGCTACTAAAACTAAAGAATTTATGTCAGAGATGAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCGGCTAGTCATGATGAGCTTTTCCTTATATATGAATATGCTCAGAAGGGTTCGCTCAGCAGCCATTTGAATGATGCTCAAAATAAGGGTCATTCACCTCTTTCTTGGATCACAAGGGTCCAGATTGCACTTGATGCTGCTAGGGGACTTGAATACATACATGAGCATACAAAAACTCGTTACGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCATTTAGAGCCAAGCTATCAGATTTTGGGTTAGCAAAACTTGTAGGTAAAACAAGTGAGGGAGAAACCAGTACAGCCAGAGTTGTAAATGCATATGGATATCTTGCTCCAGAATACTTGAGCAATGGCCTTGCAACGACGAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGGAGACCATTATTCAAACACAAGGTCCTGAAAAACGATCACTGGTATCTATTATGTTGGCAGTTCTTAGGAACTCACCTGATTCCATAAGCCTGTCAAGCTCGAGAGACCTCGTTGATCCTATCATGATGGATCTGTATCCCCATGATTGTGTATTTAAGATGGCTATGCTGGCAAAGCAATGTGTGGATGAGGATCCCCTTTTACGCCCTGATATGAAGCAAGTTGTGATTTCCCTCTCACAAATCCTGCTGTCTTCTGTTGAGTGGGAAGCGACTCTAGCTGGGAACAGCCAGGTATTCAGTGGGCTTGTTCAGGGAAGATAG 1788 0.4279 MFDVLPGEITVEGNGWDYIFIRKNCSCAAGMKKYVSNTTLTVKSNGGFAHDLVMEAYDGLALLPNTTRWARKGGVISLSLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIETANGIDNPDSLTVGSLYYIPLNSVPGELYHLKNDTPPVPVPSLSVDNFSADQVNHKAHVPHEWIVGGLGVGLALIILSIILCVSLRSPNCLVEARNNAKDSEGKISNKFYVFGNSSLFCGCGKPGDPKQTDGESISHQITVTKASTLIPDMLDMDKPVVFSYEEIFSSTDGFSDSNLLGHRTYGSVYYGLLRDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHDELFLIYEYAQKGSLSSHLNDAQNKGHSPLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKLSDFGLAKLVGKTSEGETSTARVVNAYGYLAPEYLSNGLATTKSDVYAFGVVLFEIISGKETIIQTQGPEKRSLVSIMLAVLRNSPDSISLSSSRDLVDPIMMDLYPHDCVFKMAMLAKQCVDEDPLLRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0260 595 Gene3D Phosphorylase Kinase; domain 1 264 361 - -
Ssu8g0260 595 SUPERFAMILY LysM domain 93 138 IPR036779 -
Ssu8g0260 595 Gene3D Transferase(Phosphotransferase) domain 1 363 582 - -
Ssu8g0260 595 SMART serkin_6 290 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0260 595 PANTHER BNAA06G02020D PROTEIN 1 595 - -
Ssu8g0260 595 Pfam LysM domain 95 132 IPR018392 -
Ssu8g0260 595 Pfam Protein tyrosine and serine/threonine kinase 295 565 IPR001245 GO:0004672|GO:0006468
Ssu8g0260 595 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 1 595 IPR044812 GO:0019199|GO:0045087
Ssu8g0260 595 CDD LysM 94 137 IPR018392 -
Ssu8g0260 595 SMART LysM_2 94 138 IPR018392 -
Ssu8g0260 595 Gene3D LysM domain 90 144 IPR036779 -
Ssu8g0260 595 ProSiteProfiles Protein kinase domain profile. 290 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0260 595 SUPERFAMILY Protein kinase-like (PK-like) 266 567 IPR011009 -
Ssu8g0260 595 ProSiteProfiles LysM domain profile. 93 137 IPR018392 -
Ssu8g0260 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0260 Ssu-Chr8 3849226 3854582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0260 1 595 Receptor kinase-like Gene Family AT1G51940 63.622 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu8g0260 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0260 - - gmx:100781752 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0260 8 3849226 3854582 Ssu8g0260 8 3849226 3854582 ECH
Ssu8g0260 8 3849226 3854582 Ssu4g3311 4 83400296 83407378 PCT