Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0256 ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGGCACAACTCCCGGACGTGCCCGTCGCGGGGGGGCGTGAAGCTGTTCGGGGTGAGGCTCACGGATGGATCAATCATTAAGAAGAGCGCCAGCATGGGAAACCTCAACCTCTCCGCACACCACCATTGTTCTTCTTCCTCCGTCGCCGCCTCATCGCCCAATCCCAGCTCTCCCTGCTCCGACCCGCCACACGACCCCGACGGCTACTTGTCCGATGACCATCTCTCCACCTTCGCTAACCGCCgcggagaaagaaaaaaaggtGTTCCATGGACTGAAGAAGAACATCGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTATCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGGCAGAGTCACGCTACCCGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCTGATATGTCTTCAGATCCACCTTCAGTGCCAGAAGAACAAGTGCTGCTTCCACCTTCCGAGAACTCACAACCTTGTAATGGAAAATCACAGCCTTCATTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTACTTCACAAGAAAATGTGGAAAAGACCAATGAAACTATGATGGGATCAAACGGACTGACACCAATGGCTCCTCCTGGATTCTTCCCCACTTATTTTCCTGTTCCATTTCCCATATGGCCATCAACTGCGGCTCCCTTTGAAGAAGTTAAGGGAGGACAGACATCCCATCATCAGGTCCACAGGCCAATCCCCATGATTCCCAAGGAACCTGTCAATGTTGACGAACTTGTGGGAATGTCTCATCTCAGCATTGGGGAAACACAGGTACGTGATAGAGAGCCTTCCCCTCTTTCCTTAAAGTTGTTAGGAGAACCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTAGTGGTTCGGATTTAAACAGTGGCAAGAACAGTGCAATTCAAGCGGTTTGA 1038 0.4971 MTRRCSHCSNNGHNSRTCPSRGGVKLFGVRLTDGSIIKKSASMGNLNLSAHHHCSSSSVAASSPNPSSPCSDPPHDPDGYLSDDHLSTFANRRGERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMSSDPPSVPEEQVLLPPSENSQPCNGKSQPSLNLSLKSEFEPMETTSQENVEKTNETMMGSNGLTPMAPPGFFPTYFPVPFPIWPSTAAPFEEVKGGQTSHHQVHRPIPMIPKEPVNVDELVGMSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAPVSGSDLNSGKNSAIQAV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0256 345 MobiDBLite consensus disorder prediction 323 345 - -
Ssu8g0256 345 MobiDBLite consensus disorder prediction 56 84 - -
Ssu8g0256 345 SMART sant 98 148 IPR001005 -
Ssu8g0256 345 PANTHER OS01G0187900 PROTEIN 1 339 - -
Ssu8g0256 345 Gene3D - 100 151 - -
Ssu8g0256 345 SUPERFAMILY Homeodomain-like 96 150 IPR009057 -
Ssu8g0256 345 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Ssu8g0256 345 PANTHER TRANSCRIPTION FACTOR KUA1 1 339 - -
Ssu8g0256 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 150 IPR017930 -
Ssu8g0256 345 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Ssu8g0256 345 ProSiteProfiles SANT domain profile. 102 150 IPR017884 -
Ssu8g0256 345 CDD SANT 101 146 IPR001005 -
Ssu8g0256 345 MobiDBLite consensus disorder prediction 181 200 - -
Ssu8g0256 345 MobiDBLite consensus disorder prediction 163 200 - -
Ssu8g0256 345 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 97 149 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0256 Ssu-Chr8 3792578 3795656 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu8g0256 Myb_DNA-binding 7.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0256 - - gmx:778036 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0256 8 3792578 3795656 Ssu8g0256 8 3792578 3795656 ECH