Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0249 ATGGCAATGTCCTGCAAGGATGGTAAACCAGGATTGGATAACGGGAAATATGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGACTGCCCCAAACCCAGTTCCATTCGCCGCCAGCAGCTCATTCGTGAGTGCCCTATTCTCTCTAACATTGAGCCTAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCGCGGCTGCAAGCTGTGAATAGGAAGCTCACAGCCATGAACAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTCTACGAAAATGGTTACTTTCGTCAACATACCCAAAATACTGCGCTTCCAACCAAAGACACAAGCTGTGAGTCGGCGGTGACTAGCGGTCAACGCAGTTTGACAACCCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTATGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCGAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGCGGCCTAGTGGGTCTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGGCCTTCGTGGTTTCGAGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGTGACTTCTGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATTTGTGAGAGGTCtcttaaaaatacacaaaatggTCCAAGCATGCCTCCTGTACAGCATTTTGTTAGAGCTGAGATGCTTCCTAGTGGGTACCTGATAAGACCCTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCTTGGAGTGTTCCCGAAGTACTGCGGCCACTGTATGAATCATCAACAGTGCTGGCTCAGAAGACAACGATGGTGGCCCTGCGTCAACTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTTACTGGGTGGGGGAGACGACCGGCAGCTCTTCGAGCACTTGGCCAAAGACTCAGCCGTGGTTTCAATGAGGCGATCAATGGGTTCACTGATGAGGGATGGTCAATGATTGGCAATGATGGTGTTGATGATGTTACGGTTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCATCTGTTAGTAATGCAGTCTTGTGTGCCAAAGCTTCAATGCTATTACAGAATGTGCCTCCAGCTATTCTACTAAGGTTCCTACGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTGGCTTACCAGGATCTCGGGTTGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACTATCGAGCATGAGGAGTTTCTGGAAGTTATTAAATTGGAAGGAAGTGCTCATTCTCCTGAAGACACTATAATGCCTAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGAACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATCATTCCTCTTGATTCTGGAAAGGAAGCATCCAACCCAAATCGCACCCTTGACCTGGCATCTGCCCTTGACATTGGCCCCACTGGAAACAGAGCATCGAATGATTATTCTGGAAATTCTGGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGATCATGTAGCTTCCATGGCACGACAATACGTTCGTAGCATTATATCATCTGTCCAAAGGGTAGCATTAGCACTTTCGCCTTCTCATTTGAGTTCACAAGCTGGGCTTAGAACACCACTGGGTACTCCTGAAGCGCAAACGCTTGCTCGCTGGATCTGCAATAGTTATAGGTGCTACTTGGGTGTCGAGCTACTTAAATCTAATAATGAGGGGAACGAATCTTTGCTCAAGTCCTTGTGGCACCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCGCCAACCAGGCAGGGCTTGACATGCTGGAGACCACCTTAGTTGCTTTACAAGATATAACATTAGAGAAAATATTTGATGATCATGGCCGAAAGATTCTGTGCTCAGAGTTTCCCCAAATTATTCAACAGGGTTTTGCATGCCTTCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGACCTATCTCATATGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCATTTGTTTGA 2514 0.4614 MAMSCKDGKPGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTALPTKDTSCESAVTSGQRSLTTQHPPRDASPAGLMSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEAINGFTDEGWSMIGNDGVDDVTVLVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCGLPGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGSAHSPEDTIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDIGPTGNRASNDYSGNSGCMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0249 837 SUPERFAMILY Bet v1-like 159 348 - -
Ssu8g0249 837 Coils Coil 71 112 - -
Ssu8g0249 837 Pfam START domain 160 368 IPR002913 GO:0008289
Ssu8g0249 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Ssu8g0249 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Ssu8g0249 837 Gene3D - 12 82 - -
Ssu8g0249 837 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Ssu8g0249 837 Pfam MEKHLA domain 694 836 IPR013978 -
Ssu8g0249 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Ssu8g0249 837 MobiDBLite consensus disorder prediction 126 149 - -
Ssu8g0249 837 CDD START_ArGLABRA2_like 154 369 - -
Ssu8g0249 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Ssu8g0249 837 MobiDBLite consensus disorder prediction 126 154 - -
Ssu8g0249 837 Gene3D - 194 372 IPR023393 -
Ssu8g0249 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Ssu8g0249 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 837 IPR044830 GO:0003700
Ssu8g0249 837 CDD bZIP 68 107 - -
Ssu8g0249 837 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 837 - -
Ssu8g0249 837 SMART START_1 159 369 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0249 Ssu-Chr8 3668691 3675217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0249 1 789 Homeobox Transcription Factor Family AT1G52150 86.869 0.0 1429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu8g0249 START 1.7e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0249 K09338 - zju:107428556 1606.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0249 8 3668691 3675217 Ssu8g0249 8 3668691 3675217 ECH
Ssu8g0249 8 3668691 3675217 Ssu4g3322 4 83578383 83585455 PCT