Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0241 ATGACCGAAACAAGGTGTCACGAAACTCCTAGCAGCAGCACCAGCAACTCCTCCACTTCAAAACCCCAGAAAACAGAGCCCCAAAAACAGAGCAACGCAAAGAGAGGCAGAGACCCCAGCAAGCACCCGGTTTACCACGGGGTGCGAATGCGCAACTGGGGCAAGTGGGTGTCCGAAATTCGCGAGCCACGCAAGAAATCACGCATCTGGCTCGGCACTTTCGCCACGCCTGAAATGGCGGCACGTGCGCACGACGTTGCGTCTCTGAGCATAAAAGGCCACACAGCGATTCTCAACTTTCCAAACATAGCGAGCATGCTTCCCAGACCCATCACGTTGACGCCACGTGACATCCAAGCCGCCGCCGCGGAAGCCGCCGCGATGGTGGAATTCGACCGTGACGGTTCGGAGGCGGAGGAGCTGAGTCAGATTGTGGAGCTGCCCAACATAGAAGAGAGCTTCGACTCGGTGGACTCGAGAACTGAGTTCGCGTTGACCGACTCGGTGGATAGTTGGGTGTACCCTCCAACGCCGGTGGGGAGCATTTGGGAACAAAGTTTTATGATGGAGAGTTCTGAGTGTGGATTCCAATTTGGGAATGATCACCAACAAAAAACATGTTCGGTTTAA 630 0.5492 MTETRCHETPSSSTSNSSTSKPQKTEPQKQSNAKRGRDPSKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVASLSIKGHTAILNFPNIASMLPRPITLTPRDIQAAAAEAAAMVEFDRDGSEAEELSQIVELPNIEESFDSVDSRTEFALTDSVDSWVYPPTPVGSIWEQSFMMESSECGFQFGNDHQQKTCSV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0241 209 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Ssu8g0241 209 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Ssu8g0241 209 MobiDBLite consensus disorder prediction 1 47 - -
Ssu8g0241 209 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Ssu8g0241 209 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Ssu8g0241 209 MobiDBLite consensus disorder prediction 28 45 - -
Ssu8g0241 209 CDD AP2 45 102 IPR001471 GO:0003700|GO:0006355
Ssu8g0241 209 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Ssu8g0241 209 MobiDBLite consensus disorder prediction 1 27 - -
Ssu8g0241 209 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Ssu8g0241 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 206 - -
Ssu8g0241 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 206 - -
Ssu8g0241 209 Pfam AP2 domain 43 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0241 Ssu-Chr8 3557873 3558502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0241 13 176 AP2-EREBP Transcription Factor Family AT5G11590 53.646 5.40e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu8g0241 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0241 K09286 - gmx:100784419 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0241 8 3557873 3558502 Ssu8g0241 8 3557873 3558502 ECH