Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0225 ATGTCTAGAGCATTGGAACATGATTACATAGGGTTGGCAGAGGATGGTAAAACCCCATCACTCAACTTGAAGGAGACAGAGCTGAGGCTTGGCCTCCCTGGTTGCGAGTCTCCAGAGAGAAGACCAGGTGCTGGACTCTGTCTTTTCGGCAAGGAGTTGCAGAACAAGCATAATGTTTGTTCATTGGCAAGTCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCTATTGATGCCTCTTCTGGGAAATGGGGTTCCTCTGTCACTGATGGATCTCAAATTGATTTGGGGAAAGGAGCTGCTTTGTTCTCTCCCAGAGGGGCCAATGTTGGGAAGCCTCTTGTTGGTTTGGACACACAAACTAACACCCAGCAGGCTAACACCACCATCAAAGAGGCTGCTCTAGTTCCTCAATCTGCCAAACCGGTGCAGGAAAAGAATAATCAGGTTGCTGCAACAAATGGCCATGCCAGTGCTCCTGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTCAGAAAGAACACGATGGCCTCTAATTTGACAAAGAACAATGATGAAGCTGAGGGAAAACCAGGGTTTGGTTGTCTCTATGTGAAAGTCAGTATGGATGGTGCCCCTTACCTTAGAAAGGTTGATCTCAAAACCTATAACAACTATGTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTTCCATTGgTCAATGCAATTCTCCTGGACTTCCAGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTGCTTCATGGATCTGAGTATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTGGGTGATGTTCCTTGGGGGATGTTCACTGATTCATGTCGGAGACTAAGGATAATGAAAGGCTCTGAGGCAATTGGGCTAGGTATgtcttattcttattctaagCATGCATTTACATGCGTAGTACTTTCCGGATTAAAAGTTTAA 990 0.4515 MSRALEHDYIGLAEDGKTPSLNLKETELRLGLPGCESPERRPGAGLCLFGKELQNKHNVCSLASPLKAGAKRGFSDAIDASSGKWGSSVTDGSQIDLGKGAALFSPRGANVGKPLVGLDTQTNTQQANTTIKEAALVPQSAKPVQEKNNQVAATNGHASAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYNNYVELSSALEKMFSCFSIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFTDSCRRLRIMKGSEAIGLGMSYSYSKHAFTCVVLSGLKV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0225 329 ProSiteProfiles PB1 domain profile. 200 302 IPR000270 GO:0005515
Ssu8g0225 329 Gene3D - 197 315 - -
Ssu8g0225 329 PANTHER AUXIN-RESPONSIVE PROTEIN 15 312 - -
Ssu8g0225 329 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 312 IPR003311 GO:0005634|GO:0006355
Ssu8g0225 329 SUPERFAMILY CAD & PB1 domains 200 301 - -
Ssu8g0225 329 Pfam AUX/IAA family 25 309 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0225 Ssu-Chr8 3380855 3382643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0225 203 305 B3 DNA Binding Superfamily AT2G46530 33.010 7.36e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu8g0225 AUX_IAA 5e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0225 K14484 - gmx:100804423 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0225 8 3380855 3382643 Ssu8g0225 8 3380855 3382643 ECH