Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0217 ATGGGCGCCGACATGTCCAACAATCCTCCTCCCACGTCTCACGCCAAAGACTTCTTTGCCTCTCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTTCGCCATGCTGGGGTGGCGGCTGATGCTGCCACTTCTAACATGGAGGTGGAGGAGGGGGAAGAGGGGAGTGGAGGAGGTGAAAGGTTAGAGGAAATTAGCAGCGAGAACTCGGGTCCCACGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGTGAACATGAGGGTGATGATGGTGATGGGGacaagaacaagaagaagaagaggaagaagtaTCACAGGCACACTGCTGAGCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCCCCAAGGCAAGTCAAGTTTTGGTTCCAAAACCGTCGAACCCAAATCAagGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAactaaaggagaaaaataagacCTTACGAGAGACCATAAACAAAGCTTGTTGCCCCAACTGTGGCGTGCCCACCACAAGCAGAGATGGTGCCATGCCAACCGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAGCTGCTTTAGAGAAATACGCACCAGGGACAACGCCCCCTTCATGTTCTTCTGGCCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACCGGAATTTTTGGACTTGATAAGTCAAGGATAATGGATATAGTAAACCAAGCAATGGAGGAGCTCATTAAGATGGCTACCGTCGGGGAACCACTATGGCTTCGTAGCTTCGAGACTGGTCGCGAAATACTTAACTACGACGAATATGTGAAGGAGTTTGCAGTTGATCAAAATTCAAGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACACTGGAGTTGTTTTTGTGGATCTCCCTCGACTTGTGCAAAGTTTTCAAGATGTGAATCAATGGAAGGAAATGTTTCCGTGTTTGATATCTAAGGCGGCAACTGTTGATGTTATATGCAATGGAGAAGGTCCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACCAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGCTGAACAGTGGGCTATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCGTCCCTCGTGAAATGCAGAAAACGCCCTTCCGGTTGCATTATTGAGGACAAGTCCAATGGCCATTGCAAAaTAACCTGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTCCATTCAATGTATCGCACCATTGTGAACAGCGGCTTAGCCTTTGGGGCAAGGCATTGGATTGCGACACTACAACTTCAATGTGAACGTCTAGTTTTCTTCATGGCAACAAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACGTTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGCGCATCAAGCTTCCACACATGGACCAAGGTTACAAGTAAAACTGGGGAAGACATAAGGATAAGTTCTAGAAAGAACTTGAACGATCCTGGTGAACCTCTTGGGTTGATATTGTGCGCAGTTTGTTCTGTATGGTTGCCTGCCTCACCTAATGTTCTCTTTGATTTCTTGAGGGATGAGACACGCCGAACCGAGTGGGATATCATGTCAAGTGGTGGGACGGTGCAGTCCATTGCAAATTTAGCCAAAGGACAAGACCGAGGCAATGCGGTAACCATTCAAACAATTAAATCGAAAGAAAACAGTGTGTGGATACTGCAAGATAGCTGCACAAACCCTTATGAGTCTATGGTGGTATATGCTTCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAATCTTGCCATTCTGCCCTCGGGATTCTCTATTATTCCTGATGGCCTCGAGTCAAGGCCATTCGTGATTACTTCAAGGcaggaagaaaaaaatacgGAGGGAGGATCTTTGTTTACAATGGCATTCCAGATCCTTACCAATGCTTCTCCCACAGCCAAGTTAACCGTGGAGTCTGTGGACTCGGTCAACACTCTTGTATCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGCGAAGATGGCTAG 2268 0.4484 MGADMSNNPPPTSHAKDFFASPALSLSLAGIFRHAGVAADAATSNMEVEEGEEGSGGGERLEEISSENSGPTRSRSEDDFEGEGEHEGDDGDGDKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKTLRETINKACCPNCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALEKYAPGTTPPSCSSGHDQENRSSLDFYTGIFGLDKSRIMDIVNQAMEELIKMATVGEPLWLRSFETGREILNYDEYVKEFAVDQNSSSGKPKRSIEASRDTGVVFVDLPRLVQSFQDVNQWKEMFPCLISKAATVDVICNGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKITWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPASPNVLFDFLRDETRRTEWDIMSSGGTVQSIANLAKGQDRGNAVTIQTIKSKENSVWILQDSCTNPYESMVVYASVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPFVITSRQEEKNTEGGSLFTMAFQILTNASPTAKLTVESVDSVNTLVSCTLRNIRTSLQCEDG 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0217 755 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 752 IPR042160 -
Ssu8g0217 755 Gene3D - 88 171 - -
Ssu8g0217 755 Pfam START domain 271 494 IPR002913 GO:0008289
Ssu8g0217 755 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981|GO:0006355
Ssu8g0217 755 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677
Ssu8g0217 755 CDD START_ArGLABRA2_like 264 493 - -
Ssu8g0217 755 ProSiteProfiles START domain profile. 260 497 IPR002913 GO:0008289
Ssu8g0217 755 SUPERFAMILY Bet v1-like 262 494 - -
Ssu8g0217 755 SMART HOX_1 100 162 IPR001356 GO:0003677
Ssu8g0217 755 Pfam Homeodomain 101 156 IPR001356 GO:0003677
Ssu8g0217 755 SMART START_1 269 494 IPR002913 GO:0008289
Ssu8g0217 755 Gene3D - 301 489 IPR023393 -
Ssu8g0217 755 Coils Coil 208 228 - -
Ssu8g0217 755 MobiDBLite consensus disorder prediction 40 109 - -
Ssu8g0217 755 SUPERFAMILY Bet v1-like 516 717 - -
Ssu8g0217 755 CDD homeodomain 105 156 IPR001356 GO:0003677
Ssu8g0217 755 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 17 752 - -
Ssu8g0217 755 Coils Coil 157 187 - -
Ssu8g0217 755 SUPERFAMILY Homeodomain-like 90 159 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0217 Ssu-Chr8 3231539 3237448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0217 64 754 Homeobox Transcription Factor Family AT1G79840 66.903 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu8g0217 START 1.3e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0217 K09338 - gmx:100809926 1349.34