Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0206 ATGGAACCAGTGGGCCACATCATTGAAAGGAGGGAAAATATTTCTGGGTTACCAGCAAGTAAAGATGCAGCTGGAAGCGGTTATGTTCCACCTGATGTATTAATGTCTCAGATCTTACCTGCAATAAACAAGTCAGCAAATTATGGAGGTGTGGTCTTGTGGTCAAGGTACTATGATAAACTGAGTGGATACAGTACCgacattcaaaattttcaaataaatcagACAGCGAACCCTCTGTGCACACTGCGAAGTCTTCCCGGATGCAGGAGCCTTGACGGCGGTTTCGTGGAACGTGTTGGTAACATGTCCACTGTTGGTATCAAAGTTTATGAAGATGGCAACAATGGTACACGGTGCTGTGAGATCATATGTCGGAACAACTGTTCATGTGACGCGTATGGCCCAATAAATCACATTAACAATACCGGATGCCAGATATGGCTCAAAGGACCCAAATTCCTCAGAGCTTCTGGGGATGTATCACTGCCAATCTACGTTTCTGTTGCACTGCTACAAGAAGACAAAGTTACGTCCACATTCCTTACCACAAAAGTAAACAGGTGGTGGATATGGCTCATCGTTGGGGTGGGAGCAGCCCTTGCAATACCTGTGATCTTCTATTTATGTCGTGCCTTGCTGAGAAAATACAAAGCAAAAGTGGAGAGAAAGAAGATGCAGGAGAAGATATTGCATGACATTGGAGGTAATGCCATGCTTTCAATGGTGTACGGCAAAACcataaaaagtaagaacaagGGAAAGACAAGCAATGAGGttgaaatattcatttttgaAACCATCGCTGCTGCCACAAACAATTTCTCAGCTGCTAATAAGTTAGGAGAGGGTGGTTTTGGTCCTGTTTATAAGGGAACATTAAGTGATCAGCAAGAAGTAGCAATAAAGCGACTTTCTAGAAGTTCTGGACAAGGGCTAATAGAGTTCACGAATGAAGCCAAACTCATGGCCAAACTCCAGCACACTAATCTTGTAAAGCTTTTAGGGTTCTGCATCCAGAGAGATGAAAGAATATTGGTGTATGAGTACATGTCTAACAAGAGTTTAGACTTCTACTTATTTGATTCGGCTAGAAAGAATTTGCTAGACTGGGAAAAACGGTTGAACATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTTCACAAGTATTCAAGACTAAAGGTGATTCATCGGGACCTGAAAGCAAGTAACATATTGCTTGATCATGAGATGAATCCTAAAATATCTGACTTTGGCATGGCTCGAATATTTGGTACAAGAGCATCAGAAGAAAACACAAACAGAGTTGTTGGTACATATGGCTATATGGCTCCAGAGTATGCAATAAATGGTGTTGTGTCCATCAAAACAGATGTATTTAGCTTTGGTATACTGCTACTGGAGATACTTAGTGGCAAGAAGAATAATAGTCGCTATCATCCGGATCGCCAACTCAACCTCATAGGATACGCGTGGCAGCTCTGGAACGAAGGCAGAGGTCTGGAGCTACTAGACCCAGCATTAAATGAATTGTGTTCTCAGAATGAAGTTTTGAGATGTATTCATATCGGACTCTTGTGTGTACAAGATCAAGCAGCAGATAGACCTACCATGTTAGATAttgtttcttttctatcaaatgATACAATCCAACTTCCCCAACCAAAGCAGCCAGCATTCTTCATCAATGTGGTTGTGGAAGAGTCAGAGCTTCCTTACAGCAGGCAAGAACTTCGTTCCTTAAATGACGTAACAATTTCTAGTACGCATGGAAGATAA 1782 0.4057 MEPVGHIIERRENISGLPASKDAAGSGYVPPDVLMSQILPAINKSANYGGVVLWSRYYDKLSGYSTDIQNFQINQTANPLCTLRSLPGCRSLDGGFVERVGNMSTVGIKVYEDGNNGTRCCEIICRNNCSCDAYGPINHINNTGCQIWLKGPKFLRASGDVSLPIYVSVALLQEDKVTSTFLTTKVNRWWIWLIVGVGAALAIPVIFYLCRALLRKYKAKVERKKMQEKILHDIGGNAMLSMVYGKTIKSKNKGKTSNEVEIFIFETIAAATNNFSAANKLGEGGFGPVYKGTLSDQQEVAIKRLSRSSGQGLIEFTNEAKLMAKLQHTNLVKLLGFCIQRDERILVYEYMSNKSLDFYLFDSARKNLLDWEKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKASNILLDHEMNPKISDFGMARIFGTRASEENTNRVVGTYGYMAPEYAINGVVSIKTDVFSFGILLLEILSGKKNNSRYHPDRQLNLIGYAWQLWNEGRGLELLDPALNELCSQNEVLRCIHIGLLCVQDQAADRPTMLDIVSFLSNDTIQLPQPKQPAFFINVVVEESELPYSRQELRSLNDVTISSTHGR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0206 593 PANTHER OS01G0783800 PROTEIN 98 562 - -
Ssu8g0206 593 Gene3D Glycosidases 10 72 - -
Ssu8g0206 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Ssu8g0206 593 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 98 562 - -
Ssu8g0206 593 SUPERFAMILY (Trans)glycosidases 16 68 IPR017853 -
Ssu8g0206 593 Pfam Protein tyrosine and serine/threonine kinase 278 545 IPR001245 GO:0004672|GO:0006468
Ssu8g0206 593 Pfam Domain of unknown function (DUF3403) 548 593 IPR021820 GO:0004674
Ssu8g0206 593 Gene3D Phosphorylase Kinase; domain 1 248 350 - -
Ssu8g0206 593 Pfam PAN-like domain 114 150 IPR003609 -
Ssu8g0206 593 CDD STKc_IRAK 281 546 - -
Ssu8g0206 593 ProSiteProfiles Protein kinase domain profile. 275 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0206 593 Gene3D Transferase(Phosphotransferase) domain 1 351 557 - -
Ssu8g0206 593 SMART serkin_6 275 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0206 593 SUPERFAMILY Protein kinase-like (PK-like) 258 574 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0206 Ssu-Chr8 3082206 3084982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0206 265 561 Receptor kinase-like Gene Family AT4G23230 61.279 1.05e-130 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g0206 PK_Tyr_Ser-Thr 7.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0206 - - gmx:100794508 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0206 8 3082206 3084982 Ssu8g0206 8 3082206 3084982 ECH