Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu8g0189 | ATGATGTTATCAAACCTTAAAGAAATAGCAGAGAAAAATCTGAATGCAGCCGTTGTTGATTGCTGCATTGGAATTCCAGTTTATTTTACTGATCTCCAGAGGAGAGCAGTCTTGGATGCCGCCACTATTGCGGGTTTGCACCCACTTCGCCTGATTCATGAAACAACAGCAACTGCATTGGCTTATGGAATTTATAAGACTGATCTTCCTGAAAATGATCAGCTGAATGTTGCCTTTGTTGATGTTGGACATGCCAGCATGCAAGTGTGCATTGCTGGATATAAAAAGGGGCAGCTGAAAGTGTTGTCCCATTCATATGATAGGTCCCTAGGTGGGAGGGACTTTGACGAGGTTCTGTTCAATCATTTTGCTGCAAAGTTTAAGGAGGAGTACAAGATTGATGTCTTCCAGAATGCTCGGGCTTGTCTAAGGTTGAGGGCTGCTTGTGAGAAGCTGAAGAAGATGCTTAGTGCAAATCCAGAGGCACCTCTGAACATTGAGTGCTTAATGGATGAGAAGGACGTCAGAGGCTTTATCAAGCGTGATGAGTTTGAGCAACTAAGTCTTCCAATTTTGGAACGAGTGAAGGGACCTTTGGAGAGGGCACTTGCAGAGGCAGGTCTTACAGTTGAGAATTGTGCAATTCTCAGTCCAACTTTCAAAGTGCGGGAGTTTCAGGTCAACGAAAGCTTTCCTTTCTCAATTTCTCTCTCGTGGAAAGGTTCTAGTTCTGATGCACAGGAAGGTGGACCAGATAATAAACAAAGTACCCTTGTTTTCCCCAAGGGCAATCCCATATCAAGTGTCAAGGCACTGACATTCTACAGGCCAGGAACATTTTCTATTGATGTTCAATACGATGATGTGAGTGGTTTGCAAACACCTGCAAAGATCAGCACATACACTATTGGCCCTTTCCAATCTACgaaaaatgaaaaggcaaaaattaaagttaaagttcGGTTGAATCTGCATGGAATTGTATCTGTTGAATCTGCAACTCTCCTGGAAGAGGAGGAGGTTGAGGTTCTGGTTTCCAAAGAACCAGCCGGAGAAAATACCAAGATGGAAACTGATGAAGCTCCTGCTGATGCTGCTGCACCTCCTAGCACCAATGACAATGATGTTAACATGCAAGATGCTAATGCCAAGGCAACTACTGATGCCCCTGGAGCCGAAAATGGTATCCCTGAAACAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGGTTGAAGCtccaaagaaaaaagtgaagaaaataaacattCCTGTGGTAGAGTTAGTTTATGGAGCAATGGCGGCTGTGGATGTCCAGAAAGCTGTAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGAGTGATGGAGGAAacaaaagacaagaaaaatgcGGTAGAGGCTTATGTTTATGATATGCGAAACAAGCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTTACTGCTAAACTTCAGGAGGTGGAAGACTGGCTATATGAAGATGGTGAAGATGAAACTAAAGGCGTATACATTGCCAAACTAGAAGAGCTCAAGAAGCAAGGTGATCCAATTGAAGAGCGTTATAAAGAATACATGGAGAGGGGTACAGTAATTGATCAACTCATCTATTGTATAAATAGTTACAGAGAAGCTGCAATGTCAAATGATCCCAAATTCGATCACATTGACATCAACGAGAAACAGAAGGTCCTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAGAAACAGCAACAGGACTCGCTTCCAAAATATGCCACCCCTGTACTTTTGTCAGCTGACATAAGAAAGAAAGCTGAAGCTGTTGACAGGTTCTGTAAGCCAATTATGACAAAACCAAAGCCACCGAAGCCAGCTACTCCTGAAGAGCCAGCAACCCCGCCTCCTCAGGGTGGTGAGCCGCCacagcagcagcagcaacaacCACCTCAGGAGAATCCAAATGCCAGCACTAATGAAAATGCAGGGGACAATGGTAATCCAGCCCCGCCACCAGCATCTGCTGAAGCAATGGAGACTGACAAAACAGAGAACACAGGCTCtgcttaa | 2094 | 0.4222 | MMLSNLKEIAEKNLNAAVVDCCIGIPVYFTDLQRRAVLDAATIAGLHPLRLIHETTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGYKKGQLKVLSHSYDRSLGGRDFDEVLFNHFAAKFKEEYKIDVFQNARACLRLRAACEKLKKMLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLSLPILERVKGPLERALAEAGLTVENCAILSPTFKVREFQVNESFPFSISLSWKGSSSDAQEGGPDNKQSTLVFPKGNPISSVKALTFYRPGTFSIDVQYDDVSGLQTPAKISTYTIGPFQSTKNEKAKIKVKVRLNLHGIVSVESATLLEEEEVEVLVSKEPAGENTKMETDEAPADAAAPPSTNDNDVNMQDANAKATTDAPGAENGIPETGDKPVQMDTDTKVEAPKKKVKKINIPVVELVYGAMAAVDVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVIDSEREAFTAKLQEVEDWLYEDGEDETKGVYIAKLEELKKQGDPIEERYKEYMERGTVIDQLIYCINSYREAAMSNDPKFDHIDINEKQKVLNECVEAENWLREKKQQQDSLPKYATPVLLSADIRKKAEAVDRFCKPIMTKPKPPKPATPEEPATPPPQGGEPPQQQQQQPPQENPNASTNENAGDNGNPAPPPASAEAMETDKTENTGSA | 697 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu8g0189 | 697 | MobiDBLite | consensus disorder prediction | 345 | 405 | - | - | |
| Ssu8g0189 | 697 | Gene3D | - | 67 | 212 | - | - | |
| Ssu8g0189 | 697 | Coils | Coil | 520 | 540 | - | - | |
| Ssu8g0189 | 697 | MobiDBLite | consensus disorder prediction | 621 | 697 | - | - | |
| Ssu8g0189 | 697 | SUPERFAMILY | Actin-like ATPase domain | 1 | 66 | IPR043129 | - | |
| Ssu8g0189 | 697 | MobiDBLite | consensus disorder prediction | 626 | 651 | - | - | |
| Ssu8g0189 | 697 | SUPERFAMILY | Actin-like ATPase domain | 76 | 212 | IPR043129 | - | |
| Ssu8g0189 | 697 | Gene3D | Actin; Chain A, domain 4 | 111 | 194 | - | - | |
| Ssu8g0189 | 697 | PANTHER | HSC70CB, ISOFORM G-RELATED | 1 | 212 | - | - | |
| Ssu8g0189 | 697 | MobiDBLite | consensus disorder prediction | 370 | 384 | - | - | |
| Ssu8g0189 | 697 | PANTHER | HEAT SHOCK 70 KDA PROTEIN 14 | 212 | 696 | - | - | |
| Ssu8g0189 | 697 | MobiDBLite | consensus disorder prediction | 652 | 673 | - | - | |
| Ssu8g0189 | 697 | SUPERFAMILY | Heat shock protein 70kD (HSP70), C-terminal subdomain | 437 | 534 | IPR029048 | - | |
| Ssu8g0189 | 697 | Gene3D | - | 1 | 66 | - | - | |
| Ssu8g0189 | 697 | SUPERFAMILY | Heat shock protein 70kD (HSP70), C-terminal subdomain | 548 | 632 | IPR029048 | - | |
| Ssu8g0189 | 697 | PANTHER | HSC70CB, ISOFORM G-RELATED | 212 | 696 | - | - | |
| Ssu8g0189 | 697 | Gene3D | Substrate Binding Domain Of DNAk; Chain A, domain 1 | 223 | 432 | IPR029047 | - | |
| Ssu8g0189 | 697 | Pfam | Hsp70 protein | 213 | 535 | IPR013126 | GO:0005524|GO:0140662 | |
| Ssu8g0189 | 697 | Pfam | Hsp70 protein | 1 | 211 | IPR013126 | GO:0005524|GO:0140662 | |
| Ssu8g0189 | 697 | MobiDBLite | consensus disorder prediction | 345 | 359 | - | - | |
| Ssu8g0189 | 697 | Gene3D | - | 435 | 543 | IPR029048 | - | |
| Ssu8g0189 | 697 | SUPERFAMILY | Heat shock protein 70kD (HSP70), peptide-binding domain | 220 | 467 | IPR029047 | - | |
| Ssu8g0189 | 697 | PANTHER | HEAT SHOCK 70 KDA PROTEIN 14 | 1 | 212 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu8g0189 | Ssu-Chr8 | 2812438 | 2816178 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu8g0189 | 1 | 226 | Calmodulin-binding Proteins | AT1G16030 | 34.934 | 5.11e-40 | 154 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu8g0189 | K09489 | - | gmx:100778196 | 1162.52 |
Event-related genes