Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0186 ATGGATGGCATTGAGGATGATGCGAGGTATGCCCCTAACCCTTATGGTATCATTAGTCACCATAAAGGTTATGGTTATCAGAATTCTCCATATTCCCTCCCGGTTGATACTGAATATgctgaagatgatgatgatgatgaaaatgaagaacaAGAGCAGTTAGAAGGAGATGATGAGGTTGATCAAAGTAACAGCCTTCAGCTTCCCCAAAAAGATGCTGATGAAGAAGATGGCATGGATGGGGGTGGTGATGAAAATGATGATGACCATGAtgatgaggaggaggaggaggaggacaACAAACAGATTAGTTATTGTGCCACTAAGAGTGAAGATGATTTAGAGTGGCACCCAAGAAAGCAGAAGCTGAAGAGTTTGATTTCAACCTATGAACTTGCTCCTCGAGTGCCAGCACCATCAGCTGCAGCTCCCTCAGCTCCTAAACCATCTTCTGGGGGTAGGAATTCACTTACAGACTGGACTGAGAATGAGACATTTGTTCTTCTTGATGCATGGGGTGATAGGTTTCTTCAACATGGAAGGAAGAGCCTTAGATGTGAGGAATGGCAACAAGTTGCAAAAATGGTATCAcaagtttcaaaaattgaaaggaCGGATACTCAGTGTAGAAATCGTCTAGAtacattgaagaaaaaatacaagaagGAGAATGCTAAGTTTCCAGATGGTGATGGTGGAGCTAGCAAATGGGTTTATTTTAAAAGGATGGATGAGCTAATGTCTTCTCCTCCGCAACAAGCTGGTCTCTCTTGTGGTTTGGACTCAGGAGAGTATGTTTTTATGAACCCCGGAGTTTATTTGAACCGTTCAAATGGGCTGGATGAAATGAGGGATAGTCCTGAGAATACGGAATCTACTGGTGAAGAAGGTTCTGATGGGCCTCaagcaaagaaaagaaggagaggaagggGCAGTGGTGAAGCTTCTTCTTTCAGGTTACTTGCTGATTCCATTCAGAAATTCAGTAAGATATATGAGAAcatagaaaatagtaaaaggCAGCAGATGGTGGAACTGGAAAAGATGAGGATGGATTTCCAAAAAGAATTGGAAACACAGAAGAGGCAGATTTTAGAGAATTTGCAGTGTGAGATTTCAAAACTAGAGCAGAGAAATGATGAGAATGATGATTCTGCTGAGAATGGTACGTGA 1173 0.3708 MDGIEDDARYAPNPYGIISHHKGYGYQNSPYSLPVDTEYAEDDDDDENEEQEQLEGDDEVDQSNSLQLPQKDADEEDGMDGGGDENDDDHDDEEEEEEDNKQISYCATKSEDDLEWHPRKQKLKSLISTYELAPRVPAPSAAAPSAPKPSSGGRNSLTDWTENETFVLLDAWGDRFLQHGRKSLRCEEWQQVAKMVSQVSKIERTDTQCRNRLDTLKKKYKKENAKFPDGDGGASKWVYFKRMDELMSSPPQQAGLSCGLDSGEYVFMNPGVYLNRSNGLDEMRDSPENTESTGEEGSDGPQAKKRRRGRGSGEASSFRLLADSIQKFSKIYENIENSKRQQMVELEKMRMDFQKELETQKRQILENLQCEISKLEQRNDENDDSAENGT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0186 390 PANTHER OS01G0718900 PROTEIN 38 388 - -
Ssu8g0186 390 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 38 388 IPR044823 -
Ssu8g0186 390 Coils Coil 332 385 - -
Ssu8g0186 390 Pfam Myb/SANT-like DNA-binding domain 159 246 IPR044822 -
Ssu8g0186 390 MobiDBLite consensus disorder prediction 101 118 - -
Ssu8g0186 390 MobiDBLite consensus disorder prediction 37 59 - -
Ssu8g0186 390 MobiDBLite consensus disorder prediction 77 100 - -
Ssu8g0186 390 ProSiteProfiles Myb-like domain profile. 160 217 IPR001005 -
Ssu8g0186 390 Gene3D - 160 222 - -
Ssu8g0186 390 MobiDBLite consensus disorder prediction 1 118 - -
Ssu8g0186 390 MobiDBLite consensus disorder prediction 137 158 - -
Ssu8g0186 390 MobiDBLite consensus disorder prediction 277 316 - -
Ssu8g0186 390 MobiDBLite consensus disorder prediction 298 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0186 Ssu-Chr8 2790284 2791456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0186 311 388 Trihelix Transcription Factor Family AT3G14180 42.308 9.46e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu8g0186 Myb_DNA-bind_4 1.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0186 - - gmx:100814194 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0186 8 2790284 2791456 Ssu8g0186 8 2790284 2791456 ECH