Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0176 ATGTCACGTGTTAGCAAAGTGATAGCAGACCTCAAGCCTGCGATTCTGATGGTGCTGGTTCAAGTTCCTTATGCTGGGGTTAGCATCATGTTCAAATTGGTTGCCAATGATGGGATGAGCTTGAGTGTCCTTATGGCCTATCGCTACATTTTTGCATCGCTTTTCATGGTTCCTCTTGCCTACTTTGTCGATAGAAAGAGCAAGCCGAAGATCACAGTGCAAGTACTCTTTCAAGCATTTCTTTGTGGATTATTTGGGGCATCCATACAACAAAATTTATTCGTGGCAGCAATTTCTCTGGCAAGTGCAACAAATGCTACGGCCATGTACAACCTCATTCCTGGTGCTACCTTTATCCTAGCTGTCTGCTTTAGATTGGAAAGGTTGAACATTGGAACATCAGCAGGGAAGGCGAAAGTGGTTGGCACTCTGATAGGCATAGGTGGAGCCATGATGCTCACCTTCTATAAGAACACTGAGATTCACATCTGGTCAACGCATGTGAACCTGATGCCACATATACAGCCACATGATGTGTCTCCCACTAAAATTTGGGGCTCTTCTCTTGCTTTCGGCACTTGTATATCCTATTCAATATGGTTGATAATTCAGGCTAAGATGAGTGCGAAATTTCCTTGGCATTACACAAGTGCGGCTTTGATGTCAGTGATGGCCTGCATTCAATCAATTACATTTGCTCTCTTGATGGAAAGAAATCATTGGAGTCGTTGGAGGCTTGGCTGGAATATCAGACTTCTCACTGCATTTTATACGggTGTTGTGGGTTCTGGACTTTGTTGGGTTCTCACTGCGTGGTGCGTGCGCTTAAAAGGCCCACTTTATACTGCCGTTTTCAACCCTCTCTTCCTGGTTCTAGTGGCCATTGCAGGGTCTCTGCTATTGGATGAAAGGCTCTATTTGGGAAgcATAATAGGATCGATTTTGATTGTGTTGGGGCTATACCTTGTCTTGTGGGGTAAAGGTAATGAATTAAAGGGAACTGCCGAGCAGAAAATGCTAACAAAAGGTTCACTCGACGTTGAACCGTTGGAACTAATTACCACAAATCATGCAgatggcaatggtggtggaaatgataatagtaacatggaaaaaggagaaggaaaaggaCAAAGAGCAGTGAAAGATGTTTCAATAAAagggaaagaagaaaataaaatcaaggaAATTCCAATTGACCATCAAGAACTCAAAACTTAG 1221 0.4029 MSRVSKVIADLKPAILMVLVQVPYAGVSIMFKLVANDGMSLSVLMAYRYIFASLFMVPLAYFVDRKSKPKITVQVLFQAFLCGLFGASIQQNLFVAAISLASATNATAMYNLIPGATFILAVCFRLERLNIGTSAGKAKVVGTLIGIGGAMMLTFYKNTEIHIWSTHVNLMPHIQPHDVSPTKIWGSSLAFGTCISYSIWLIIQAKMSAKFPWHYTSAALMSVMACIQSITFALLMERNHWSRWRLGWNIRLLTAFYTGVVGSGLCWVLTAWCVRLKGPLYTAVFNPLFLVLVAIAGSLLLDERLYLGSIIGSILIVLGLYLVLWGKGNELKGTAEQKMLTKGSLDVEPLELITTNHADGNGGGNDNSNMEKGEGKGQRAVKDVSIKGKEENKIKEIPIDHQELKT 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0176 406 PANTHER WAT1-RELATED PROTEIN 12 349 - -
Ssu8g0176 406 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020|GO:0016021
Ssu8g0176 406 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020|GO:0016021
Ssu8g0176 406 PANTHER WAT1-RELATED PROTEIN 12 349 IPR030184 GO:0016021|GO:0022857
Ssu8g0176 406 MobiDBLite consensus disorder prediction 372 406 - -
Ssu8g0176 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 156 - -
Ssu8g0176 406 MobiDBLite consensus disorder prediction 355 406 - -
Ssu8g0176 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0176 Ssu-Chr8 2686831 2689630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0176 1 356 Nodulin-like Gene Family AT1G68170 43.324 1.01e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0176 - - aprc:113856022 579.326