Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0171 ATGGATGTTACTTCTCTGAGTCCAAATAACAATACCCAAACCGACCAACACCCTTTGCTGATGGAGCAGCCGGAAACCCATAACAGGCATCAGCACGTAATTGACATTACAAGGAATGGTGAAGCTCTAACCACGTCATCTCGTAATGATCAACACTCCGAAATGCATTTACCGCAGAATGAAGATCAACCAGCTGGGGATACACAAGATTCCACTCATCAGACATCTTCATCTTCTGCATCTAGATTAAACTCCAGAAATTCAGCTTCGTTGAGAAGAGGTGAGGGGTATGGTCATCACGGAAGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCCATCGTCGTTTTGTCATTGGCCAGGAATGAAAATCCCCAAGCCCCGTTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTCTACTGGCGTTTTCGAAACCGTAATCAAAGCAGTGAACAAGATACCTCTCAACCATCTCAAGGACATTCTGGAAGCAATCCTCCAGATCGTACTTATACTGCCATCTATGTTTCTCATGTCTCAGACGAGGAGAATGGTCATGCTACACAATCAGCCACAAGAAACACTATAATTCCTGGAGCCTTTACTTCCAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGTTGTATCGGATATGCAATGCCATTTATATTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGaggatttttctcaaaatagaGGAGCAACAGTAGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAATTGAAGAACAATGAAAATGGTGATGATCAGGATGTCAATGCAGCTATAGATGAAGGTGGCATTTTGGCTGCAGGGACAGAAAAAGAGCGAGTGATTTCAGGAGAAGATGCTGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCACGTAGTGTGTGTTGACAAATGGTTAAAGATAAATGCATCCTGCCCTCTTTGTAAAAGTGAAGTTGGTACAAGTAATGGAGGGTCACCTTCAGCCTGGGACTCCAGTACTCATTAG 1278 0.4171 MDVTSLSPNNNTQTDQHPLLMEQPETHNRHQHVIDITRNGEALTTSSRNDQHSEMHLPQNEDQPAGDTQDSTHQTSSSSASRLNSRNSASLRRGEGYGHHGRSPLNSGLWISVELVVTVSQIIASIVVLSLARNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSSEQDTSQPSQGHSGSNPPDRTYTAIYVSHVSDEENGHATQSATRNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFIFCATICCCLPCIISVLGIREDFSQNRGATVESINALPIFKFKLKNNENGDDQDVNAAIDEGGILAAGTEKERVISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKSEVGTSNGGSPSAWDSSTH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0171 425 SUPERFAMILY RING/U-box 357 412 - -
Ssu8g0171 425 CDD RING-H2_RNF111_like 364 406 - -
Ssu8g0171 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 421 - -
Ssu8g0171 425 SMART ringv_2 364 406 IPR011016 GO:0008270
Ssu8g0171 425 MobiDBLite consensus disorder prediction 169 188 - -
Ssu8g0171 425 MobiDBLite consensus disorder prediction 62 91 - -
Ssu8g0171 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 414 IPR013083 -
Ssu8g0171 425 MobiDBLite consensus disorder prediction 45 103 - -
Ssu8g0171 425 Pfam Ring finger domain 365 406 IPR001841 -
Ssu8g0171 425 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Ssu8g0171 425 SMART ring_2 365 405 IPR001841 -
Ssu8g0171 425 PANTHER PROTEIN, PUTATIVE-RELATED 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0171 Ssu-Chr8 2611546 2614441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0171 1 416 C3H Transcription Factor Family AT1G80400 57.041 3.43e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0171 - - gmx:100819729 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0171 8 2611546 2614441 Ssu8g0171 8 2611546 2614441 ECH