Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0170 ATGGACAAAGAAGGTCTTGGACTTGAAATCACAGAGCTAAGGTTGGGCCTTCCCGGTGGGGAACCTGTATGTGTAGGGgacaagaaggagaagaagagggTGTTCTCGGAGATTGAAGGTGATGGGGATGATGAAAACAGCTCCTCCGAAGACCAGAAAATGCAAACGAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGCTCGTACCGGAAGAAGAACAGCGTGAATGAAACGAAAATGTACGTCAAAGTTAGCATGGACGGGGCTCCTTTCTTGCGTAAAATTGATTTAGGCATGCACAAGGGATATTCGGAGTTGGCCTTGGCCTTGGAGAAGTTCTTCGGTTGCTATGGAATCGGCGAAGCGTTGAAGGATGCGGACAATGCTGAGCACGTTCCCATCTACGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGAGCACGAACAATGTCATCACAAAGTGGCATCCACTCCCCGGAATCCGACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCCTGGGCCTTCCCGGTACCAAAGCTGGCTCAAAACGTGGCTTCTCCGACACCGTTGATCTTCATCTTGGCACTTCTGAAAACAAAATGTTGCGCCCCACCTCCAAATTCCCAACACCCAAGGAACATGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGTGATGAAGAGTTGCAAGTTCGTGAAGGTGGCAGTGGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAAATGTACGGGAGTTATGAGCATTTGCTGAGGGAATTAGAGGCCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTCATGGACTCTGGAAATGGGATAGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTTGGGGATGTACCCTGGAAGTAA 1035 0.4812 MDKEGLGLEITELRLGLPGGEPVCVGDKKEKKRVFSEIEGDGDDENSSSEDQKMQTKNQVVGWPPVCSYRKKNSVNETKMYVKVSMDGAPFLRKIDLGMHKGYSELALALEKFFGCYGIGEALKDADNAEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGARTMSSQSGIHSPESDAVDCNLKETELTLGLPGTKAGSKRGFSDTVDLHLGTSENKMLRPTSKFPTPKEHVVGWPPVRASRKNVMKSCKFVKVAVDGAPYLRKVDLEMYGSYEHLLRELEAMFCGLAIRNHLMNERKLMDSGNGIEYMPTYEDKDGDWMLVGDVPWK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0170 344 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 168 IPR003311 GO:0005634|GO:0006355
Ssu8g0170 344 MobiDBLite consensus disorder prediction 177 191 - -
Ssu8g0170 344 MobiDBLite consensus disorder prediction 36 57 - -
Ssu8g0170 344 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 186 344 IPR003311 GO:0005634|GO:0006355
Ssu8g0170 344 SUPERFAMILY CAD & PB1 domains 73 164 - -
Ssu8g0170 344 ProSiteProfiles PB1 domain profile. 265 344 IPR000270 GO:0005515
Ssu8g0170 344 Pfam AUX/IAA family 263 344 IPR033389 -
Ssu8g0170 344 Pfam AUX/IAA family 43 171 IPR033389 -
Ssu8g0170 344 MobiDBLite consensus disorder prediction 173 193 - -
Ssu8g0170 344 ProSiteProfiles PB1 domain profile. 79 167 IPR000270 GO:0005515
Ssu8g0170 344 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 3 168 - -
Ssu8g0170 344 SUPERFAMILY CAD & PB1 domains 257 344 - -
Ssu8g0170 344 Gene3D - 73 176 - -
Ssu8g0170 344 Gene3D - 259 344 - -
Ssu8g0170 344 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 186 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0170 Ssu-Chr8 2554124 2582643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0170 76 169 B3 DNA Binding Superfamily AT4G23980 38.298 2.45e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu8g0170 AUX_IAA 5.6e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0170 K14484 - sspl:121800076 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0170 8 2554124 2582643 Ssu8g0170 8 2554124 2582643 ECH
Ssu4g3387 4 84392976 84396969 Ssu8g0170 8 2554124 2582643 PCT