Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0165 ATGAGTGGGAGTGCGTTGAGTGGCCTGCAAGACCACCTTAAATTGGCCAGAGAATACGCCGCGGAAGGACTCTACGACACTTCTATCATCTTCTTCGACGGCGCTGTTGCTCAGATCAACAAGCACCTTAACAATGTGGAGGACCCTTTAGTCCGAGCGAAATGGATGAAGGTGAAGAAAGCGCTGTGTGAGGAAACGGAGGTAGTGAAACAACTAGATGCCGAGAGAAGGGCGTTTAAGGAAACCCGCCCTGCTTCAATATCACACTCATCACAGAGACAGTCCTCCTCCTTTGTTTTTCAACCGTTGGATGAGTATCCCATTCCCACCACCTCTCCTTCTTCATCCATCGATGATCATGACCCCGACGTGTGGAGGCCGCCCAGTCGAGATGCCAGAAGGCCCGCCAGGCCCACTGCTCGCAAGGATGGGGCCTGGGCCCGAGGTTCTACCAGGACCGCCGCTCGTGGCGCGAAGCCCAGGGTTAACTCTGGGCCCCGACCTCCCACCACCGGAAAGAAGGGCACTGCCTCTGGAAAGTCGAACAGGGCAGATTCACTTAATGGGGATGGTAGTGAGGATGGGAAGTCAAAGAGGTCACAATATGAAGGTCCTGATCCTGACTTAGCGGAAATGCTTGAAAGGGATGTGTTAGAAACGTCTCCTGGTGTGAGATGGGATGATGTTGCAGGCCTCAATGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTACTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATAAGGAGACCCTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACGCTTCTTGCTAAGGCAGTTGCTACTGAATGTGGTACCACATTCTTTAACGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGGGAGAGCGAGCGCATGGTACGGTGCTTGTTTGATCTTGCAAGAGCATATGCACCCAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCACGAGTCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAATAATAGTTCCACAAATGAAGACGGTACCCGTAAAATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAGGCACTGAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTACAGGTGGCCCCTGATGTCAACATAGATGAAGTGGCTCGCCGGACAGAAGGGTATAGTGGAGATGACTTGACAAATGTCTGTCGTGATGCTTCCCTGAATGGTATGCGGCGTAAGATAGCGGGAAAGACGCGTGATGAGATCAAGAACATGTCGAAGGATGAGATTTCCAAGGATCCCGTTGCAATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAAACAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTGCCGAATTTGGATCAGCATAA 1536 0.4915 MSGSALSGLQDHLKLAREYAAEGLYDTSIIFFDGAVAQINKHLNNVEDPLVRAKWMKVKKALCEETEVVKQLDAERRAFKETRPASISHSSQRQSSSFVFQPLDEYPIPTTSPSSSIDDHDPDVWRPPSRDARRPARPTARKDGAWARGSTRTAARGAKPRVNSGPRPPTTGKKGTASGKSNRADSLNGDGSEDGKSKRSQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLNEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVQVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALKKVQTSVSQADIERHEKWFAEFGSA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0165 511 ProSitePatterns AAA-protein family signature. 372 391 IPR003960 GO:0005524|GO:0016887
Ssu8g0165 511 PANTHER AAA DOMAIN-CONTAINING 5 511 - -
Ssu8g0165 511 MobiDBLite consensus disorder prediction 103 207 - -
Ssu8g0165 511 Pfam ATPase family associated with various cellular activities (AAA) 263 400 IPR003959 GO:0005524|GO:0016887
Ssu8g0165 511 MobiDBLite consensus disorder prediction 169 186 - -
Ssu8g0165 511 Pfam AAA+ lid domain 422 463 IPR041569 -
Ssu8g0165 511 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 5 511 - -
Ssu8g0165 511 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 511 IPR028596 GO:0008017|GO:0008568|GO:0051013
Ssu8g0165 511 Gene3D - 401 487 - -
Ssu8g0165 511 MobiDBLite consensus disorder prediction 119 141 - -
Ssu8g0165 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 508 IPR027417 -
Ssu8g0165 511 Gene3D - 4 80 - -
Ssu8g0165 511 Pfam Vps4 C terminal oligomerisation domain 464 509 IPR015415 -
Ssu8g0165 511 Gene3D - 221 502 IPR027417 -
Ssu8g0165 511 CDD AAA 257 400 - -
Ssu8g0165 511 MobiDBLite consensus disorder prediction 103 118 - -
Ssu8g0165 511 MobiDBLite consensus disorder prediction 187 207 - -
Ssu8g0165 511 SMART AAA_5 259 402 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0165 Ssu-Chr8 2496779 2499621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0165 215 456 Calmodulin-binding Proteins AT3G56690 43.496 1.95e-51 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0165 K07767 - zju:112489859 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0165 8 2496779 2499621 Ssu8g0165 8 2496779 2499621 ECH
Ssu8g0165 8 2496779 2499621 Ssu4g3390 4 84447402 84450918 PCT