Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0142 ATGTCGGGCATCTACAGTGCTTGTGCTTTTGATCATAATCACAGGCCACACAGGGCAAGCCAACCTGCTTGGCAAGCAATAAAGAACCTTTGTGCACAACACGGAGAAGTTCAACTGGACCACTTCCACCTCTTATGCCGCCTAGGCTGCGGGGATATTGGAAAAGTTTTCCTCTGCAAGATTAACAAATCTTTGAAGCCACACCCCAATTGCTATTATGCCATGAAAATAGTGGACAGAAAGTCTCTGACCTTGAAAAATAAGCTGAAGAGGGCAGACATGGAGAAGGAAGTATTGAGCATCCTTGACCACCCTTTTTTGCCAACCCTTTATGCTAAATTGGATGCTCATCAATACTCATGTTTGGTCATGGATTACTGCCCTGGTGGTGACTTGTTTACACTTCAGCAGCACCAGCCAGATCTTCATTTTAGCATCTCCACTGCAAGATTCTTTGCAGCTGAGGTGCTTCTAGCTCTAGAGTATCTCCACATGATGGGGATAATTTATAGAGACCTCAAGCCAGAAAACGTGCTTATTCAGAAAGATGGCCATATCATGCTATCCGACTTTGATCTCTCTCTTCACTTGGAAGTTCACCCCAAGATTCTAAAACATGGTCTCGTGTACGAGGCTGTGAACAAGGGAATGAGGAAGCCAATGTTGTGTTGCAGATATTCAGATGAGGATACGAAAAAGGGTAAGAAAAAAGCAGCCACTGTAGATGGGGAAGACATTATTGAAATGTCAGCTGAACCCATGAATGGTAGATCACATTCATTTGTAGGGACTCATGAGTATCTGGCACCAGAGGTGGTTTTGGGGTTGGGCCATGGAAGTGCAGTGGATTGGTGGGCATTTGGTGCGGTTCTTTATGAGCTATTATTTGGATTTACACCTTTTAAGGATACAAGCAGTAAGAAGACACTGGACAATATCTTGAGGCAATCAGTAACCTTCCCAAGAAGAACAAATTGTAGAGACAGAAAAGATCTTGAGGAGATGGCAAAGGCACAGGACCTTATAGGGAAGCTGCTGGTGAAAGACCCCAACAAGAGAATGGGATACAACACGGGATCTTGCGAGATAAAAAAACACAAGTTCTTTGAGGGGGTCAACTGGGCCTTAATCAGATCAGTTAAACCTCCTTTTATTCCTGGATCTAGAACTATAACTTTACATGAAAAACAAACCTCATTTACCATGCCAAAACTAGGCATCAAGGATAAAGCTACAAGACTAGGCCCTCATCAAATTGACTTCTTCTAA 1269 0.4326 MSGIYSACAFDHNHRPHRASQPAWQAIKNLCAQHGEVQLDHFHLLCRLGCGDIGKVFLCKINKSLKPHPNCYYAMKIVDRKSLTLKNKLKRADMEKEVLSILDHPFLPTLYAKLDAHQYSCLVMDYCPGGDLFTLQQHQPDLHFSISTARFFAAEVLLALEYLHMMGIIYRDLKPENVLIQKDGHIMLSDFDLSLHLEVHPKILKHGLVYEAVNKGMRKPMLCCRYSDEDTKKGKKKAATVDGEDIIEMSAEPMNGRSHSFVGTHEYLAPEVVLGLGHGSAVDWWAFGAVLYELLFGFTPFKDTSSKKTLDNILRQSVTFPRRTNCRDRKDLEEMAKAQDLIGKLLVKDPNKRMGYNTGSCEIKKHKFFEGVNWALIRSVKPPFIPGSRTITLHEKQTSFTMPKLGIKDKATRLGPHQIDFF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0142 422 Gene3D Phosphorylase Kinase; domain 1 40 126 - -
Ssu8g0142 422 Pfam Protein kinase domain 258 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0142 422 Pfam Protein kinase domain 43 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0142 422 SMART serkin_6 42 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0142 422 SUPERFAMILY Protein kinase-like (PK-like) 23 390 IPR011009 -
Ssu8g0142 422 ProSiteProfiles AGC-kinase C-terminal domain profile. 370 422 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu8g0142 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Ssu8g0142 422 Gene3D Transferase(Phosphotransferase) domain 1 254 387 - -
Ssu8g0142 422 ProSiteProfiles Protein kinase domain profile. 42 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0142 422 PANTHER FLIPPASE KINASE 1-RELATED 11 422 - -
Ssu8g0142 422 PANTHER PROTEIN KINASE PINOID 2 11 422 - -
Ssu8g0142 422 Gene3D Transferase(Phosphotransferase) domain 1 127 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0142 Ssu-Chr8 2110610 2112067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0142 12 422 AGC Kinase Gene Family AT2G26700 45.053 6.17e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu8g0142 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0142 K08286 - nnu:104592366 464.922