Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0140 ATGGACGCAGAAGATTATCATGATTTGAACAAGTCAACAGAATCAGAAACAGCTTTTAATCATAATCATGATCGTCGTAACTTGATGGTGAAGACTGAGTTGTGCAGGAGATTCAGGAGAGGCGTGTGCGGTCTTGGCTCCAAATGCAACTACGCCCACAGCGTTGCCGAGCTGAGACGCCAACCCAAACTATGCAGATTGTTCCTTCAAAACAAACACTGCCCCTATGGACGCACTTGTCGTTTTCTGCATTCAACGACAATACCACCACCTTTTCCAATCCCAAACCCACAATTTCAACCAGAACTAGGGAAACTTCATCGCTACCCTTCTGCAGAATACAACACAATGCAAACTTCTGCAGCTGCTCCAAGTGATGGCTACTGTTCTGCAGAATACAGGATAATGCAAACTTCTGCTGCTGCTTCAAATGCCTCAACTAGCTCTTCGCATAAGAATGAACCATCATATCCTGTGAAGCGCATATTCAAGGAAAACGAACTGCAAAAGATCAGTCGCATATATGCTGATTGGATTTGA 540 0.4426 MDAEDYHDLNKSTESETAFNHNHDRRNLMVKTELCRRFRRGVCGLGSKCNYAHSVAELRRQPKLCRLFLQNKHCPYGRTCRFLHSTTIPPPFPIPNPQFQPELGKLHRYPSAEYNTMQTSAAAPSDGYCSAEYRIMQTSAAASNASTSSSHKNEPSYPVKRIFKENELQKISRIYADWI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0140 179 Gene3D - 62 87 - -
Ssu8g0140 179 Gene3D - 21 61 - -
Ssu8g0140 179 MobiDBLite consensus disorder prediction 1 20 - -
Ssu8g0140 179 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Ssu8g0140 179 SMART c3hfinal6 59 86 IPR000571 GO:0046872
Ssu8g0140 179 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 12 178 - -
Ssu8g0140 179 PANTHER CCCH ZINC FINGER/TIS11-RELATED 12 178 IPR045877 GO:0003729
Ssu8g0140 179 ProSiteProfiles Zinc finger C3H1-type profile. 59 87 IPR000571 GO:0046872
Ssu8g0140 179 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 85 IPR000571 GO:0046872
Ssu8g0140 179 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 31 54 IPR000571 GO:0046872
Ssu8g0140 179 SUPERFAMILY CCCH zinc finger 61 86 IPR036855 GO:0046872
Ssu8g0140 179 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Ssu8g0140 179 SUPERFAMILY CCCH zinc finger 28 60 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0140 29 87 C3H Transcription Factor Family AT1G68200 41.791 2.29e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu8g0140 zf-CCCH 1.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0140 - - ccaj:109805785 210.305